Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC20.15■□□□□ 0.82
COL3A1P02461 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 FUK-207ENST00000571514 3054 ntTSL 2 BASIC20.15■□□□□ 0.82
COL3A1P02461 INE2-201ENST00000630399 1874 ntBASIC20.15■□□□□ 0.82
COL3A1P02461 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC20.15■□□□□ 0.82
COL3A1P02461 FAM8A4P-201ENST00000435433 1213 ntBASIC20.15■□□□□ 0.82
COL3A1P02461 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC20.15■□□□□ 0.82
COL3A1P02461 ZNF767P-206ENST00000513792 565 ntBASIC20.15■□□□□ 0.82
COL3A1P02461 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC20.15■□□□□ 0.82
COL3A1P02461 MIR4741-201ENST00000579822 90 ntBASIC20.15■□□□□ 0.82
COL3A1P02461 EEF1DP1-201ENST00000585891 896 ntBASIC20.15■□□□□ 0.82
COL3A1P02461 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC20.15■□□□□ 0.82
COL3A1P02461 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC20.15■□□□□ 0.82
COL3A1P02461 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.15■□□□□ 0.82
COL3A1P02461 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL3A1P02461 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
COL3A1P02461 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20.15■□□□□ 0.82
COL3A1P02461 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
COL3A1P02461 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL3A1P02461 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC20.14■□□□□ 0.82
COL3A1P02461 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC20.14■□□□□ 0.82
COL3A1P02461 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.14■□□□□ 0.81
COL3A1P02461 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 GOLGA2P4-201ENST00000441462 777 ntBASIC20.14■□□□□ 0.81
COL3A1P02461 HSPB1P2-201ENST00000448722 546 ntBASIC20.14■□□□□ 0.81
COL3A1P02461 HIST2H2BB-201ENST00000449108 381 ntBASIC20.14■□□□□ 0.81
COL3A1P02461 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 AC092658.1-201ENST00000505836 891 ntBASIC20.14■□□□□ 0.81
COL3A1P02461 ACR-203ENST00000529621 708 ntTSL 5 BASIC20.14■□□□□ 0.81
COL3A1P02461 PPY2P-201ENST00000582808 702 ntBASIC20.14■□□□□ 0.81
COL3A1P02461 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 RPS15-202ENST00000585665 467 ntTSL 3 BASIC20.14■□□□□ 0.81
COL3A1P02461 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL3A1P02461 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 MECR-202ENST00000373791 2416 ntTSL 2 BASIC20.14■□□□□ 0.81
COL3A1P02461 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC20.14■□□□□ 0.81
COL3A1P02461 AC008741.2-201ENST00000612792 3115 ntBASIC20.14■□□□□ 0.81
COL3A1P02461 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 AC003102.2-201ENST00000589195 1469 ntBASIC20.14■□□□□ 0.81
COL3A1P02461 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL3A1P02461 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
COL3A1P02461 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC20.13■□□□□ 0.81
COL3A1P02461 AC004945.1-201ENST00000416738 983 ntBASIC20.13■□□□□ 0.81
COL3A1P02461 CHMP1AP1-201ENST00000445563 662 ntBASIC20.13■□□□□ 0.81
COL3A1P02461 AC108725.1-201ENST00000495472 409 ntBASIC20.13■□□□□ 0.81
COL3A1P02461 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC20.13■□□□□ 0.81
COL3A1P02461 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.13■□□□□ 0.81
COL3A1P02461 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 RN7SL560P-201ENST00000577943 264 ntBASIC20.13■□□□□ 0.81
COL3A1P02461 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC20.13■□□□□ 0.81
COL3A1P02461 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC20.13■□□□□ 0.81
COL3A1P02461 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC20.13■□□□□ 0.81
COL3A1P02461 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC20.13■□□□□ 0.81
COL3A1P02461 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL3A1P02461 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
COL3A1P02461 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.12■□□□□ 0.81
COL3A1P02461 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
COL3A1P02461 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL3A1P02461 AC007969.1-201ENST00000433675 447 ntBASIC20.12■□□□□ 0.81
COL3A1P02461 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC20.12■□□□□ 0.81
COL3A1P02461 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC20.12■□□□□ 0.81
COL3A1P02461 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms