Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL807761.2-201ENST00000422849 729 ntBASIC17.88■□□□□ 0.45
SCN4AP35499 AL592076.1-201ENST00000424448 303 ntBASIC17.88■□□□□ 0.45
SCN4AP35499 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC17.88■□□□□ 0.45
SCN4AP35499 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC17.88■□□□□ 0.45
SCN4AP35499 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC17.88■□□□□ 0.45
SCN4AP35499 DGAT2L7P-201ENST00000602462 744 ntBASIC17.88■□□□□ 0.45
SCN4AP35499 AC005041.3-201ENST00000606287 649 ntBASIC17.88■□□□□ 0.45
SCN4AP35499 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
SCN4AP35499 MIR6769A-201ENST00000617340 73 ntBASIC17.88■□□□□ 0.45
SCN4AP35499 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.88■□□□□ 0.45
SCN4AP35499 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC17.88■□□□□ 0.45
SCN4AP35499 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.88■□□□□ 0.45
SCN4AP35499 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
SCN4AP35499 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
SCN4AP35499 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.87■□□□□ 0.45
SCN4AP35499 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SCN4AP35499 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.87■□□□□ 0.45
SCN4AP35499 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 HCG27-204ENST00000424675 895 ntTSL 3 BASIC17.87■□□□□ 0.45
SCN4AP35499 AC024293.1-201ENST00000467930 498 ntBASIC17.87■□□□□ 0.45
SCN4AP35499 AC006122.1-201ENST00000493323 440 ntBASIC17.87■□□□□ 0.45
SCN4AP35499 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC17.87■□□□□ 0.45
SCN4AP35499 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SCN4AP35499 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC17.87■□□□□ 0.45
SCN4AP35499 AC093752.3-201ENST00000567343 901 ntBASIC17.87■□□□□ 0.45
SCN4AP35499 EIF5AP2-201ENST00000585668 1047 ntBASIC17.87■□□□□ 0.45
SCN4AP35499 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC17.87■□□□□ 0.45
SCN4AP35499 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.87■□□□□ 0.45
SCN4AP35499 LINC01783-202ENST00000614408 828 ntBASIC17.87■□□□□ 0.45
SCN4AP35499 BX284668.2-205ENST00000619677 828 ntBASIC17.87■□□□□ 0.45
SCN4AP35499 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SCN4AP35499 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SCN4AP35499 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.87■□□□□ 0.45
SCN4AP35499 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SCN4AP35499 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.87■□□□□ 0.45
SCN4AP35499 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SCN4AP35499 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SCN4AP35499 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC17.86■□□□□ 0.45
SCN4AP35499 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SCN4AP35499 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.86■□□□□ 0.45
SCN4AP35499 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SCN4AP35499 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC17.86■□□□□ 0.45
SCN4AP35499 HKR1-225ENST00000592168 566 ntTSL 4 BASIC17.86■□□□□ 0.45
SCN4AP35499 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.86■□□□□ 0.45
SCN4AP35499 AC018695.7-201ENST00000624587 2492 ntBASIC17.86■□□□□ 0.45
SCN4AP35499 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.86■□□□□ 0.45
SCN4AP35499 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
SCN4AP35499 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC17.86■□□□□ 0.45
SCN4AP35499 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC17.86■□□□□ 0.45
SCN4AP35499 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC17.86■□□□□ 0.45
SCN4AP35499 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SCN4AP35499 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC17.86■□□□□ 0.45
SCN4AP35499 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SCN4AP35499 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 CYP4F23P-201ENST00000593402 1579 ntBASIC17.85■□□□□ 0.45
SCN4AP35499 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SCN4AP35499 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SCN4AP35499 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms