Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 AC016629.1-201ENST00000596579 586 ntBASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 AL096828.3-201ENST00000615354 462 ntBASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PCDHGA1Q9Y5H4 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 FLJ16779-201ENST00000612722 7638 ntBASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 TPM3P8-201ENST00000330554 643 ntBASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 AL590640.2-201ENST00000457038 527 ntBASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 AC105129.2-201ENST00000559536 390 ntBASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 NDUFV2P1-201ENST00000596415 907 ntBASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 AC138627.1-207ENST00000641560 1006 ntBASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 AL354989.2-201ENST00000435838 1540 ntBASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PCDHGA1Q9Y5H4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PCDHGA1Q9Y5H4 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms