Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 FAM220BP-201ENST00000377689 816 ntBASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AL031284.1-201ENST00000419297 478 ntBASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AC068137.2-201ENST00000605408 478 ntBASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AL773604.1-201ENST00000617417 272 ntBASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 ACE3P-201ENST00000423435 1973 ntBASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 APP-205ENST00000358918 2366 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 AL359881.3-201ENST00000602640 1721 ntBASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 AC136604.1-201ENST00000418535 575 ntBASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 AC079776.4-201ENST00000511039 504 ntBASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 RNA5SP410-201ENST00000516285 106 ntBASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC28BQ9BUN5 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.21■□□□□ 0.02
CCDC28BQ9BUN5 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 HSPA7-201ENST00000445535 1927 ntBASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC28BQ9BUN5 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms