Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SMARCA1P28370 ACTBP8-201ENST00000403258 1108 ntBASIC17.76■□□□□ 0.43
SMARCA1P28370 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.76■□□□□ 0.43
SMARCA1P28370 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 AC068587.3-201ENST00000526613 355 ntBASIC17.76■□□□□ 0.43
SMARCA1P28370 SLC25A47P1-201ENST00000531577 414 ntBASIC17.76■□□□□ 0.43
SMARCA1P28370 TDH-203ENST00000531764 1110 ntBASIC17.76■□□□□ 0.43
SMARCA1P28370 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.76■□□□□ 0.43
SMARCA1P28370 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.76■□□□□ 0.43
SMARCA1P28370 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.76■□□□□ 0.43
SMARCA1P28370 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.76■□□□□ 0.43
SMARCA1P28370 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
SMARCA1P28370 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.76■□□□□ 0.43
SMARCA1P28370 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 AC148477.4-201ENST00000613430 1793 ntBASIC17.76■□□□□ 0.43
SMARCA1P28370 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 PPT1-215ENST00000641471 2368 ntBASIC17.75■□□□□ 0.43
SMARCA1P28370 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SMARCA1P28370 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SMARCA1P28370 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SMARCA1P28370 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.75■□□□□ 0.43
SMARCA1P28370 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.75■□□□□ 0.43
SMARCA1P28370 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.75■□□□□ 0.43
SMARCA1P28370 AP001889.1-201ENST00000525414 633 ntBASIC17.75■□□□□ 0.43
SMARCA1P28370 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.75■□□□□ 0.43
SMARCA1P28370 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.75■□□□□ 0.43
SMARCA1P28370 AC233724.13-201ENST00000598383 410 ntBASIC17.75■□□□□ 0.43
SMARCA1P28370 AL162274.1-201ENST00000617191 1098 ntBASIC17.75■□□□□ 0.43
SMARCA1P28370 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.75■□□□□ 0.43
SMARCA1P28370 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.75■□□□□ 0.43
SMARCA1P28370 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.75■□□□□ 0.43
SMARCA1P28370 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.75■□□□□ 0.43
SMARCA1P28370 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SMARCA1P28370 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.75■□□□□ 0.43
SMARCA1P28370 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.75■□□□□ 0.43
SMARCA1P28370 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.75■□□□□ 0.43
SMARCA1P28370 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.75■□□□□ 0.43
SMARCA1P28370 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SMARCA1P28370 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SMARCA1P28370 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.74■□□□□ 0.43
SMARCA1P28370 AC134312.5-201ENST00000568031 1313 ntBASIC17.74■□□□□ 0.43
SMARCA1P28370 AL360270.3-201ENST00000609118 1348 ntBASIC17.74■□□□□ 0.43
SMARCA1P28370 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SMARCA1P28370 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.74■□□□□ 0.43
SMARCA1P28370 KRT8P14-201ENST00000414254 1442 ntBASIC17.74■□□□□ 0.43
SMARCA1P28370 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SMARCA1P28370 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.74■□□□□ 0.43
SMARCA1P28370 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.74■□□□□ 0.43
SMARCA1P28370 KLF2P2-201ENST00000416807 1039 ntBASIC17.74■□□□□ 0.43
SMARCA1P28370 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.74■□□□□ 0.43
SMARCA1P28370 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.74■□□□□ 0.43
SMARCA1P28370 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms