Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.96■□□□□ 0.47
CTCFP49711 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CTCFP49711 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
CTCFP49711 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 PDIA3P2-201ENST00000428073 158 ntBASIC17.96■□□□□ 0.47
CTCFP49711 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC17.96■□□□□ 0.47
CTCFP49711 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC17.96■□□□□ 0.47
CTCFP49711 AGPAT5P1-201ENST00000455855 1019 ntBASIC17.96■□□□□ 0.47
CTCFP49711 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.96■□□□□ 0.47
CTCFP49711 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC17.96■□□□□ 0.47
CTCFP49711 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC17.96■□□□□ 0.47
CTCFP49711 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC17.96■□□□□ 0.47
CTCFP49711 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CTCFP49711 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC17.96■□□□□ 0.47
CTCFP49711 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC17.96■□□□□ 0.47
CTCFP49711 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.96■□□□□ 0.47
CTCFP49711 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC17.96■□□□□ 0.47
CTCFP49711 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC17.96■□□□□ 0.47
CTCFP49711 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CTCFP49711 AC051619.9-201ENST00000623237 597 ntBASIC17.96■□□□□ 0.47
CTCFP49711 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.96■□□□□ 0.47
CTCFP49711 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
CTCFP49711 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.96■□□□□ 0.47
CTCFP49711 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CTCFP49711 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
CTCFP49711 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.96■□□□□ 0.47
CTCFP49711 AC074138.1-201ENST00000611182 1303 ntBASIC17.96■□□□□ 0.46
CTCFP49711 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
CTCFP49711 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.46
CTCFP49711 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
CTCFP49711 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.95■□□□□ 0.46
CTCFP49711 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.95■□□□□ 0.46
CTCFP49711 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.95■□□□□ 0.46
CTCFP49711 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.95■□□□□ 0.46
CTCFP49711 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CTCFP49711 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.95■□□□□ 0.46
CTCFP49711 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC17.95■□□□□ 0.46
CTCFP49711 FAM86KP-201ENST00000509817 987 ntBASIC17.95■□□□□ 0.46
CTCFP49711 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC17.95■□□□□ 0.46
CTCFP49711 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC17.95■□□□□ 0.46
CTCFP49711 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC17.95■□□□□ 0.46
CTCFP49711 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC17.95■□□□□ 0.46
CTCFP49711 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CTCFP49711 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.95■□□□□ 0.46
CTCFP49711 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.95■□□□□ 0.46
CTCFP49711 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CTCFP49711 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
CTCFP49711 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
CTCFP49711 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CTCFP49711 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.94■□□□□ 0.46
CTCFP49711 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CTCFP49711 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CTCFP49711 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CTCFP49711 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC17.94■□□□□ 0.46
CTCFP49711 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CTCFP49711 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC17.94■□□□□ 0.46
CTCFP49711 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CTCFP49711 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC17.94■□□□□ 0.46
CTCFP49711 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.94■□□□□ 0.46
CTCFP49711 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CTCFP49711 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms