Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.78■□□□□ 0.44
SMARCA1P28370 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.78■□□□□ 0.44
SMARCA1P28370 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.78■□□□□ 0.44
SMARCA1P28370 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 AC012508.2-201ENST00000567613 1472 ntBASIC17.78■□□□□ 0.44
SMARCA1P28370 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
SMARCA1P28370 TTTY23B-201ENST00000442790 549 ntBASIC17.78■□□□□ 0.44
SMARCA1P28370 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 USP32P1-208ENST00000506594 1164 ntBASIC17.78■□□□□ 0.44
SMARCA1P28370 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.78■□□□□ 0.44
SMARCA1P28370 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.78■□□□□ 0.44
SMARCA1P28370 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.78■□□□□ 0.44
SMARCA1P28370 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
SMARCA1P28370 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SMARCA1P28370 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.78■□□□□ 0.44
SMARCA1P28370 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 PAUPAR-201ENST00000630360 2965 ntBASIC17.78■□□□□ 0.44
SMARCA1P28370 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SMARCA1P28370 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMARCA1P28370 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMARCA1P28370 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMARCA1P28370 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.77■□□□□ 0.44
SMARCA1P28370 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMARCA1P28370 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMARCA1P28370 AL158070.2-201ENST00000623713 1621 ntBASIC17.77■□□□□ 0.44
SMARCA1P28370 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AC005229.1-201ENST00000392885 409 ntBASIC17.77■□□□□ 0.44
SMARCA1P28370 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AL139094.1-201ENST00000405549 1188 ntBASIC17.77■□□□□ 0.44
SMARCA1P28370 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.77■□□□□ 0.44
SMARCA1P28370 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.77■□□□□ 0.44
SMARCA1P28370 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.77■□□□□ 0.44
SMARCA1P28370 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.77■□□□□ 0.44
SMARCA1P28370 BTNL10-201ENST00000595971 695 ntBASIC17.77■□□□□ 0.44
SMARCA1P28370 AC008735.3-201ENST00000596646 500 ntBASIC17.77■□□□□ 0.44
SMARCA1P28370 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.77■□□□□ 0.44
SMARCA1P28370 AL603764.1-201ENST00000636452 321 ntBASIC17.77■□□□□ 0.44
SMARCA1P28370 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SMARCA1P28370 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SMARCA1P28370 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SMARCA1P28370 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.77■□□□□ 0.43
SMARCA1P28370 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.77■□□□□ 0.43
SMARCA1P28370 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SMARCA1P28370 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
SMARCA1P28370 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SMARCA1P28370 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SMARCA1P28370 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
SMARCA1P28370 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
SMARCA1P28370 CICP11-201ENST00000434745 2827 ntBASIC17.76■□□□□ 0.43
SMARCA1P28370 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.76■□□□□ 0.43
SMARCA1P28370 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SMARCA1P28370 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SMARCA1P28370 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms