Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 PUDPP3-201ENST00000445368 636 ntBASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 CHMP1AP1-201ENST00000445563 662 ntBASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 LRRC59-203ENST00000576448 1531 ntBASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 AC068587.8-201ENST00000641239 219 ntBASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 AL645728.1-201ENST00000366221 2101 ntBASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AL139384.1-201ENST00000612143 3047 ntBASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 RN7SKP214-201ENST00000364208 315 ntBASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 ETV2-207ENST00000619399 994 ntTSL 5 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AL132780.4-201ENST00000624870 1135 ntBASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 NAP1L6-202ENST00000641404 1222 ntBASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AC011270.2-201ENST00000624293 2550 ntBASIC18.35■□□□□ 0.53
SMC1BQ8NDV3 AC009053.2-201ENST00000563701 2365 ntBASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 C2orf69P1-201ENST00000563532 1093 ntBASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMC1BQ8NDV3 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.33■□□□□ 0.53
SMC1BQ8NDV3 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms