Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CYP2T1P-202ENST00000641596 2535 ntBASIC15.08■□□□□ 0
COL28A1Q2UY09 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.08■□□□□ 0
COL28A1Q2UY09 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.08■□□□□ 0
COL28A1Q2UY09 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.08■□□□□ 0
COL28A1Q2UY09 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.08■□□□□ 0
COL28A1Q2UY09 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.07■□□□□ 0
COL28A1Q2UY09 ME2P1-201ENST00000426028 1970 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
COL28A1Q2UY09 AC006449.5-201ENST00000610658 2098 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.07■□□□□ 0
COL28A1Q2UY09 LINC01144-201ENST00000626198 1710 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
COL28A1Q2UY09 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.07■□□□□ 0
COL28A1Q2UY09 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
COL28A1Q2UY09 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.07■□□□□ 0
COL28A1Q2UY09 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 AC104457.1-201ENST00000401024 814 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.07■□□□□ 0
COL28A1Q2UY09 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC15.07■□□□□ 0
COL28A1Q2UY09 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
COL28A1Q2UY09 AC026954.1-201ENST00000429771 1293 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.07■□□□□ 0
COL28A1Q2UY09 FTH1P14-201ENST00000482930 551 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.07■□□□□ 0
COL28A1Q2UY09 FAM86HP-204ENST00000513466 959 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 AC068587.3-201ENST00000526613 355 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 PTP4A1P2-201ENST00000546033 454 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC15.07■□□□□ 0
COL28A1Q2UY09 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 AC026979.3-201ENST00000607315 403 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 AC074044.1-201ENST00000609673 707 ntBASIC15.07■□□□□ 0
COL28A1Q2UY09 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.07■□□□□ 0
COL28A1Q2UY09 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL28A1Q2UY09 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.06■□□□□ 0
COL28A1Q2UY09 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.06■□□□□ 0
COL28A1Q2UY09 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
COL28A1Q2UY09 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.06■□□□□ 0
COL28A1Q2UY09 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 RN7SL399P-201ENST00000471648 279 ntBASIC15.06■□□□□ 0
COL28A1Q2UY09 TMEM198B-204ENST00000484016 896 ntBASIC15.06■□□□□ 0
COL28A1Q2UY09 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.06■□□□□ 0
COL28A1Q2UY09 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
COL28A1Q2UY09 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.06■□□□□ 0
COL28A1Q2UY09 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.06■□□□□ 0
COL28A1Q2UY09 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.06■□□□□ 0
COL28A1Q2UY09 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms