Protein–RNA interactions for Protein: Q12829

RAB40B, Ras-related protein Rab-40B, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40BQ12829 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.04□□□□□ -0.16
RAB40BQ12829 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RAB40BQ12829 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RAB40BQ12829 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RAB40BQ12829 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RAB40BQ12829 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RAB40BQ12829 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RAB40BQ12829 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.04□□□□□ -0.16
RAB40BQ12829 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.04□□□□□ -0.16
RAB40BQ12829 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RAB40BQ12829 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RAB40BQ12829 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 BX640514.1-201ENST00000583223 1918 ntBASIC14.03□□□□□ -0.16
RAB40BQ12829 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RAB40BQ12829 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.03□□□□□ -0.16
RAB40BQ12829 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.03□□□□□ -0.16
RAB40BQ12829 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 AC104581.4-201ENST00000623126 3052 ntBASIC14.03□□□□□ -0.16
RAB40BQ12829 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RAB40BQ12829 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.03□□□□□ -0.16
RAB40BQ12829 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.03□□□□□ -0.16
RAB40BQ12829 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.03□□□□□ -0.16
RAB40BQ12829 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.03□□□□□ -0.16
RAB40BQ12829 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.03□□□□□ -0.16
RAB40BQ12829 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 AC025580.3-201ENST00000617932 1424 ntBASIC14.03□□□□□ -0.16
RAB40BQ12829 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.03□□□□□ -0.16
RAB40BQ12829 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.03□□□□□ -0.16
RAB40BQ12829 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RAB40BQ12829 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.02□□□□□ -0.16
RAB40BQ12829 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.02□□□□□ -0.16
RAB40BQ12829 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.02□□□□□ -0.16
RAB40BQ12829 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.16
RAB40BQ12829 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RAB40BQ12829 AC084364.1-201ENST00000551967 1556 ntBASIC14.02□□□□□ -0.16
RAB40BQ12829 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
RAB40BQ12829 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.02□□□□□ -0.16
RAB40BQ12829 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.02□□□□□ -0.16
RAB40BQ12829 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RAB40BQ12829 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.02□□□□□ -0.16
RAB40BQ12829 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.02□□□□□ -0.16
RAB40BQ12829 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RAB40BQ12829 BCAR1-209ENST00000546196 1340 ntBASIC14.02□□□□□ -0.17
RAB40BQ12829 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.02□□□□□ -0.17
RAB40BQ12829 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40BQ12829 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40BQ12829 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40BQ12829 AC002056.1-201ENST00000395613 760 ntBASIC14.02□□□□□ -0.17
RAB40BQ12829 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.02□□□□□ -0.17
RAB40BQ12829 AC136604.1-201ENST00000418535 575 ntBASIC14.02□□□□□ -0.17
RAB40BQ12829 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.02□□□□□ -0.17
RAB40BQ12829 RNA5SP410-201ENST00000516285 106 ntBASIC14.02□□□□□ -0.17
RAB40BQ12829 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.02□□□□□ -0.17
RAB40BQ12829 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.02□□□□□ -0.17
RAB40BQ12829 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RAB40BQ12829 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms