Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.22■□□□□ 0.03
HNF4AP41235 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
HNF4AP41235 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
HNF4AP41235 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.22■□□□□ 0.03
HNF4AP41235 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.22■□□□□ 0.03
HNF4AP41235 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 AC097493.3-201ENST00000509725 367 ntBASIC15.22■□□□□ 0.03
HNF4AP41235 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 AC015911.4-201ENST00000588022 1070 ntBASIC15.22■□□□□ 0.03
HNF4AP41235 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.22■□□□□ 0.03
HNF4AP41235 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.22■□□□□ 0.03
HNF4AP41235 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HNF4AP41235 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HNF4AP41235 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.21■□□□□ 0.03
HNF4AP41235 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
HNF4AP41235 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
HNF4AP41235 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
HNF4AP41235 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.21■□□□□ 0.03
HNF4AP41235 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.21■□□□□ 0.03
HNF4AP41235 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
HNF4AP41235 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
HNF4AP41235 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
HNF4AP41235 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.21■□□□□ 0.03
HNF4AP41235 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.21■□□□□ 0.03
HNF4AP41235 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.21■□□□□ 0.03
HNF4AP41235 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 RFPL4AP1-201ENST00000530883 850 ntBASIC15.21■□□□□ 0.03
HNF4AP41235 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 AC027796.2-201ENST00000575326 344 ntBASIC15.21■□□□□ 0.03
HNF4AP41235 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.21■□□□□ 0.03
HNF4AP41235 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.21■□□□□ 0.03
HNF4AP41235 AL390754.1-201ENST00000619088 582 ntBASIC15.21■□□□□ 0.03
HNF4AP41235 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.21■□□□□ 0.03
HNF4AP41235 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HNF4AP41235 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HNF4AP41235 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HNF4AP41235 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HNF4AP41235 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HNF4AP41235 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
HNF4AP41235 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms