Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC9P31274 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
HOXC9P31274 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC20.42■□□□□ 0.86
HOXC9P31274 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
HOXC9P31274 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
HOXC9P31274 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC20.42■□□□□ 0.86
HOXC9P31274 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
HOXC9P31274 AC005077.2-201ENST00000449786 690 ntBASIC20.42■□□□□ 0.86
HOXC9P31274 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC20.42■□□□□ 0.86
HOXC9P31274 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC20.42■□□□□ 0.86
HOXC9P31274 AC020914.3-201ENST00000594712 304 ntBASIC20.42■□□□□ 0.86
HOXC9P31274 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 TNRC18P3-201ENST00000441896 2691 ntBASIC20.42■□□□□ 0.86
HOXC9P31274 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC9P31274 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.42■□□□□ 0.86
HOXC9P31274 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC20.42■□□□□ 0.86
HOXC9P31274 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
HOXC9P31274 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.41■□□□□ 0.86
HOXC9P31274 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 CSH2-202ENST00000345366 598 ntTSL 5 BASIC20.41■□□□□ 0.86
HOXC9P31274 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 CHMP1AP1-201ENST00000445563 662 ntBASIC20.41■□□□□ 0.86
HOXC9P31274 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC20.41■□□□□ 0.86
HOXC9P31274 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC20.41■□□□□ 0.86
HOXC9P31274 RNA5SP423-201ENST00000517127 109 ntBASIC20.41■□□□□ 0.86
HOXC9P31274 AC126915.1-201ENST00000522847 1038 ntBASIC20.41■□□□□ 0.86
HOXC9P31274 ADM-202ENST00000524948 584 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 DUX4L47-201ENST00000566374 394 ntBASIC20.41■□□□□ 0.86
HOXC9P31274 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC20.41■□□□□ 0.86
HOXC9P31274 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC20.41■□□□□ 0.86
HOXC9P31274 NKG7-204ENST00000595217 816 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.41■□□□□ 0.86
HOXC9P31274 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
HOXC9P31274 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC9P31274 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC20.41■□□□□ 0.86
HOXC9P31274 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC9P31274 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
HOXC9P31274 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC20.41■□□□□ 0.86
HOXC9P31274 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC20.4■□□□□ 0.86
HOXC9P31274 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HOXC9P31274 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 AC090340.1-201ENST00000620778 4980 ntBASIC20.4■□□□□ 0.86
HOXC9P31274 OR6D1P-202ENST00000641007 5290 ntBASIC20.4■□□□□ 0.86
HOXC9P31274 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.4■□□□□ 0.86
HOXC9P31274 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC20.4■□□□□ 0.86
HOXC9P31274 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HOXC9P31274 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC20.4■□□□□ 0.86
HOXC9P31274 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC20.4■□□□□ 0.86
HOXC9P31274 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 NCK2-206ENST00000522586 490 ntTSL 5 BASIC20.4■□□□□ 0.86
HOXC9P31274 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC20.4■□□□□ 0.86
HOXC9P31274 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HOXC9P31274 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC9P31274 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC20.4■□□□□ 0.86
HOXC9P31274 KLK11-210ENST00000600362 759 ntTSL 3 BASIC20.4■□□□□ 0.86
HOXC9P31274 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC20.4■□□□□ 0.86
HOXC9P31274 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.4■□□□□ 0.86
HOXC9P31274 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms