Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.8■□□□□ 0.12
VCANP13611 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC15.8■□□□□ 0.12
VCANP13611 CTBP2P6-201ENST00000526402 1229 ntBASIC15.8■□□□□ 0.12
VCANP13611 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC15.8■□□□□ 0.12
VCANP13611 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.8■□□□□ 0.12
VCANP13611 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 MIR3677-201ENST00000578964 60 ntBASIC15.8■□□□□ 0.12
VCANP13611 AC055811.3-201ENST00000584952 686 ntBASIC15.8■□□□□ 0.12
VCANP13611 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VCANP13611 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VCANP13611 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
VCANP13611 AP000911.2-201ENST00000534330 502 ntBASIC15.79■□□□□ 0.12
VCANP13611 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.79■□□□□ 0.12
VCANP13611 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.79■□□□□ 0.12
VCANP13611 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VCANP13611 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.79■□□□□ 0.12
VCANP13611 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.79■□□□□ 0.12
VCANP13611 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.79■□□□□ 0.12
VCANP13611 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC15.79■□□□□ 0.12
VCANP13611 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.79■□□□□ 0.12
VCANP13611 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VCANP13611 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC15.79■□□□□ 0.12
VCANP13611 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
VCANP13611 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.79■□□□□ 0.12
VCANP13611 AC011471.3-201ENST00000623576 402 ntBASIC15.79■□□□□ 0.12
VCANP13611 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC15.79■□□□□ 0.12
VCANP13611 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VCANP13611 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VCANP13611 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
VCANP13611 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VCANP13611 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
VCANP13611 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
VCANP13611 HIST2H2BA-201ENST00000412169 381 ntBASIC15.79■□□□□ 0.12
VCANP13611 RPL8P2-201ENST00000430538 502 ntBASIC15.79■□□□□ 0.12
VCANP13611 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.79■□□□□ 0.12
VCANP13611 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.79■□□□□ 0.12
VCANP13611 AC011462.4-201ENST00000616866 449 ntBASIC15.79■□□□□ 0.12
VCANP13611 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC15.79■□□□□ 0.12
VCANP13611 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCANP13611 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC15.78■□□□□ 0.12
VCANP13611 AC018846.1-201ENST00000568231 183 ntBASIC15.78■□□□□ 0.12
VCANP13611 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.78■□□□□ 0.12
VCANP13611 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 AC008741.2-201ENST00000612792 3115 ntBASIC15.78■□□□□ 0.12
VCANP13611 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.78■□□□□ 0.12
VCANP13611 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
VCANP13611 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
VCANP13611 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.78■□□□□ 0.12
VCANP13611 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC15.78■□□□□ 0.12
VCANP13611 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC15.78■□□□□ 0.12
VCANP13611 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 MRPL22P1-201ENST00000505398 616 ntBASIC15.78■□□□□ 0.12
VCANP13611 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC15.78■□□□□ 0.12
VCANP13611 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.78■□□□□ 0.12
VCANP13611 AL451007.2-201ENST00000632004 563 ntBASIC15.78■□□□□ 0.12
VCANP13611 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.78■□□□□ 0.12
VCANP13611 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 AREG-202ENST00000502307 956 ntTSL 5 BASIC15.78■□□□□ 0.12
VCANP13611 NUDT4P2-201ENST00000578341 546 ntBASIC15.78■□□□□ 0.12
VCANP13611 AC009955.4-201ENST00000597192 544 ntBASIC15.78■□□□□ 0.12
VCANP13611 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCANP13611 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.78■□□□□ 0.12
VCANP13611 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.77■□□□□ 0.12
VCANP13611 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VCANP13611 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VCANP13611 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCANP13611 FAM90A2P-201ENST00000511144 1395 ntBASIC15.77■□□□□ 0.12
VCANP13611 FAM90A25P-201ENST00000528404 1395 ntBASIC15.77■□□□□ 0.12
VCANP13611 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCANP13611 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
VCANP13611 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.77■□□□□ 0.12
VCANP13611 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms