Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.19□□□□□ -0.46
CXCL1P09341 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 AC005622.1-201ENST00000636801 1703 ntBASIC12.19□□□□□ -0.46
CXCL1P09341 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CXCL1P09341 AC067750.1-201ENST00000608826 6545 ntBASIC12.19□□□□□ -0.46
CXCL1P09341 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 AC016734.2-201ENST00000624325 1377 ntBASIC12.18□□□□□ -0.46
CXCL1P09341 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 KRT18P1-202ENST00000452408 1331 ntBASIC12.18□□□□□ -0.46
CXCL1P09341 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.18□□□□□ -0.46
CXCL1P09341 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC12.18□□□□□ -0.46
CXCL1P09341 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
CXCL1P09341 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
CXCL1P09341 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 THAP5-204ENST00000438865 868 ntTSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC12.18□□□□□ -0.46
CXCL1P09341 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC12.18□□□□□ -0.46
CXCL1P09341 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC12.18□□□□□ -0.46
CXCL1P09341 CIB2-208ENST00000560618 804 ntTSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 TPSP2-201ENST00000561760 610 ntBASIC12.18□□□□□ -0.46
CXCL1P09341 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
CXCL1P09341 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 AC092329.2-201ENST00000598402 547 ntBASIC12.18□□□□□ -0.46
CXCL1P09341 REXO1L3P-201ENST00000622202 1288 ntBASIC12.18□□□□□ -0.46
CXCL1P09341 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC12.18□□□□□ -0.46
CXCL1P09341 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.18□□□□□ -0.46
CXCL1P09341 AL353732.1-201ENST00000569618 1459 ntBASIC12.18□□□□□ -0.46
CXCL1P09341 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
CXCL1P09341 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
CXCL1P09341 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
CXCL1P09341 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
CXCL1P09341 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.18□□□□□ -0.46
CXCL1P09341 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.18□□□□□ -0.46
CXCL1P09341 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
CXCL1P09341 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
CXCL1P09341 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.17□□□□□ -0.46
CXCL1P09341 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
CXCL1P09341 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 AC104076.2-201ENST00000448912 469 ntBASIC12.17□□□□□ -0.46
CXCL1P09341 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 AC093827.2-201ENST00000512654 315 ntBASIC12.17□□□□□ -0.46
CXCL1P09341 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 AL589182.2-201ENST00000619332 1049 ntBASIC12.17□□□□□ -0.46
CXCL1P09341 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms