Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 LINC02199-201ENST00000506655 2702 ntBASIC12.74□□□□□ -0.37
LMO4P61968 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC12.74□□□□□ -0.37
LMO4P61968 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC12.74□□□□□ -0.37
LMO4P61968 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC12.74□□□□□ -0.37
LMO4P61968 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.74□□□□□ -0.37
LMO4P61968 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC12.74□□□□□ -0.37
LMO4P61968 RPL13AP20-201ENST00000459725 609 ntBASIC12.74□□□□□ -0.37
LMO4P61968 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 FAM8A2P-201ENST00000528813 1142 ntBASIC12.74□□□□□ -0.37
LMO4P61968 NOP2-211ENST00000540228 668 ntTSL 2 BASIC12.74□□□□□ -0.37
LMO4P61968 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC12.74□□□□□ -0.37
LMO4P61968 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC12.74□□□□□ -0.37
LMO4P61968 AC009542.2-202ENST00000619004 1067 ntBASIC12.74□□□□□ -0.37
LMO4P61968 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 AC138951.2-201ENST00000623455 1161 ntBASIC12.74□□□□□ -0.37
LMO4P61968 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 AC092127.1-201ENST00000567093 3455 ntBASIC12.74□□□□□ -0.37
LMO4P61968 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.74□□□□□ -0.37
LMO4P61968 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.74□□□□□ -0.37
LMO4P61968 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC12.74□□□□□ -0.37
LMO4P61968 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.74□□□□□ -0.37
LMO4P61968 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
LMO4P61968 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
LMO4P61968 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 AHCYP2-201ENST00000430630 1300 ntBASIC12.73□□□□□ -0.37
LMO4P61968 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
LMO4P61968 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
LMO4P61968 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.73□□□□□ -0.37
LMO4P61968 AL139094.1-201ENST00000405549 1188 ntBASIC12.73□□□□□ -0.37
LMO4P61968 CD8B2-202ENST00000417670 633 ntBASIC12.73□□□□□ -0.37
LMO4P61968 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC12.73□□□□□ -0.37
LMO4P61968 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC12.73□□□□□ -0.37
LMO4P61968 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC12.73□□□□□ -0.37
LMO4P61968 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC12.73□□□□□ -0.37
LMO4P61968 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC12.73□□□□□ -0.37
LMO4P61968 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC12.73□□□□□ -0.37
LMO4P61968 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC12.73□□□□□ -0.37
LMO4P61968 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC12.73□□□□□ -0.37
LMO4P61968 RN7SL560P-201ENST00000577943 264 ntBASIC12.73□□□□□ -0.37
LMO4P61968 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.73□□□□□ -0.37
LMO4P61968 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.73□□□□□ -0.37
LMO4P61968 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LMO4P61968 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC12.73□□□□□ -0.37
LMO4P61968 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms