Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 AL928921.2-201ENST00000641325 2442 ntBASIC18.37■□□□□ 0.53
MRE11P49959 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
MRE11P49959 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.37■□□□□ 0.53
MRE11P49959 LINC00982-205ENST00000420957 435 ntBASIC18.37■□□□□ 0.53
MRE11P49959 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.37■□□□□ 0.53
MRE11P49959 GAPDHP21-201ENST00000450301 1010 ntBASIC18.37■□□□□ 0.53
MRE11P49959 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.37■□□□□ 0.53
MRE11P49959 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.37■□□□□ 0.53
MRE11P49959 MIR6752-201ENST00000618442 71 ntBASIC18.37■□□□□ 0.53
MRE11P49959 Z92544.3-201ENST00000624747 417 ntBASIC18.37■□□□□ 0.53
MRE11P49959 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 CICP20-201ENST00000443330 2801 ntBASIC18.37■□□□□ 0.53
MRE11P49959 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
MRE11P49959 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 AC131009.4-201ENST00000624048 1740 ntBASIC18.37■□□□□ 0.53
MRE11P49959 HSPA7-201ENST00000445535 1927 ntBASIC18.37■□□□□ 0.53
MRE11P49959 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC18.37■□□□□ 0.53
MRE11P49959 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC18.37■□□□□ 0.53
MRE11P49959 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
MRE11P49959 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC18.36■□□□□ 0.53
MRE11P49959 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.36■□□□□ 0.53
MRE11P49959 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
MRE11P49959 HAUS4P1-201ENST00000406739 1145 ntBASIC18.36■□□□□ 0.53
MRE11P49959 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
MRE11P49959 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
MRE11P49959 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.36■□□□□ 0.53
MRE11P49959 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.36■□□□□ 0.53
MRE11P49959 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
MRE11P49959 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.36■□□□□ 0.53
MRE11P49959 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.36■□□□□ 0.53
MRE11P49959 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
MRE11P49959 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
MRE11P49959 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MRE11P49959 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 MBLAC2-202ENST00000514906 1936 ntBASIC18.35■□□□□ 0.53
MRE11P49959 BX640514.1-201ENST00000583223 1918 ntBASIC18.35■□□□□ 0.53
MRE11P49959 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
MRE11P49959 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
MRE11P49959 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
MRE11P49959 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.35■□□□□ 0.53
MRE11P49959 MEIS3P1-201ENST00000495167 958 ntBASIC18.35■□□□□ 0.53
MRE11P49959 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.35■□□□□ 0.53
MRE11P49959 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.35■□□□□ 0.53
MRE11P49959 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.35■□□□□ 0.53
MRE11P49959 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.35■□□□□ 0.53
MRE11P49959 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.35■□□□□ 0.53
MRE11P49959 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MRE11P49959 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MRE11P49959 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms