Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.24■□□□□ 0.19
PTPN9P43378 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.24■□□□□ 0.19
PTPN9P43378 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.24■□□□□ 0.19
PTPN9P43378 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.24■□□□□ 0.19
PTPN9P43378 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.24■□□□□ 0.19
PTPN9P43378 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.24■□□□□ 0.19
PTPN9P43378 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.24■□□□□ 0.19
PTPN9P43378 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 AC009118.2-201ENST00000613275 655 ntBASIC16.24■□□□□ 0.19
PTPN9P43378 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.24■□□□□ 0.19
PTPN9P43378 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PTPN9P43378 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PTPN9P43378 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTPN9P43378 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
PTPN9P43378 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PTPN9P43378 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.23■□□□□ 0.19
PTPN9P43378 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PTPN9P43378 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PTPN9P43378 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PTPN9P43378 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.23■□□□□ 0.19
PTPN9P43378 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.23■□□□□ 0.19
PTPN9P43378 SPTLC1P1-201ENST00000447199 261 ntBASIC16.23■□□□□ 0.19
PTPN9P43378 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.23■□□□□ 0.19
PTPN9P43378 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.23■□□□□ 0.19
PTPN9P43378 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
PTPN9P43378 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.23■□□□□ 0.19
PTPN9P43378 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.23■□□□□ 0.19
PTPN9P43378 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PTPN9P43378 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTPN9P43378 CLK3P2-201ENST00000427566 1453 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 SPDYE19P-201ENST00000338590 713 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
PTPN9P43378 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PTPN9P43378 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 MEP1AP4-201ENST00000423244 1087 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 GHSR-202ENST00000427970 912 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.22■□□□□ 0.19
PTPN9P43378 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN9P43378 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.22■□□□□ 0.19
PTPN9P43378 TPRX2P-201ENST00000535362 881 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.22■□□□□ 0.19
PTPN9P43378 AC023310.3-201ENST00000557027 670 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 SPCS2P1-201ENST00000561636 679 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 AC100756.1-201ENST00000562736 682 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 AC138749.3-201ENST00000567691 622 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PTPN9P43378 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.22■□□□□ 0.19
PTPN9P43378 AL096865.1-201ENST00000606796 927 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 AC116165.1-201ENST00000611806 668 ntBASIC16.22■□□□□ 0.19
PTPN9P43378 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.22■□□□□ 0.19
PTPN9P43378 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms