Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LYPLA2P1-203ENST00000447689 696 ntBASIC18■□□□□ 0.47
SCN4AP35499 DUTP3-201ENST00000450025 415 ntBASIC18■□□□□ 0.47
SCN4AP35499 PHBP15-201ENST00000574228 665 ntBASIC18■□□□□ 0.47
SCN4AP35499 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18■□□□□ 0.47
SCN4AP35499 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
SCN4AP35499 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SCN4AP35499 CMC2-224ENST00000630396 481 ntTSL 5 BASIC18■□□□□ 0.47
SCN4AP35499 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SCN4AP35499 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SCN4AP35499 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.99■□□□□ 0.47
SCN4AP35499 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SCN4AP35499 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SCN4AP35499 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.99■□□□□ 0.47
SCN4AP35499 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC17.99■□□□□ 0.47
SCN4AP35499 KRT8P31-201ENST00000504812 1408 ntBASIC17.99■□□□□ 0.47
SCN4AP35499 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC17.99■□□□□ 0.47
SCN4AP35499 NCR3-202ENST00000376071 541 ntTSL 5 BASIC17.99■□□□□ 0.47
SCN4AP35499 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SCN4AP35499 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC17.99■□□□□ 0.47
SCN4AP35499 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC17.99■□□□□ 0.47
SCN4AP35499 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC17.99■□□□□ 0.47
SCN4AP35499 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.99■□□□□ 0.47
SCN4AP35499 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.99■□□□□ 0.47
SCN4AP35499 AC148477.9-201ENST00000623974 539 ntBASIC17.99■□□□□ 0.47
SCN4AP35499 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SCN4AP35499 LTB4R2-202ENST00000528054 3092 ntBASIC17.99■□□□□ 0.47
SCN4AP35499 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.99■□□□□ 0.47
SCN4AP35499 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
SCN4AP35499 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
SCN4AP35499 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SCN4AP35499 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.98■□□□□ 0.47
SCN4AP35499 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SCN4AP35499 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SCN4AP35499 KRT18P9-201ENST00000604826 1300 ntBASIC17.98■□□□□ 0.47
SCN4AP35499 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC17.98■□□□□ 0.47
SCN4AP35499 FAU-202ENST00000434372 533 ntTSL 2 BASIC17.98■□□□□ 0.47
SCN4AP35499 ALG1L6P-201ENST00000515248 758 ntBASIC17.98■□□□□ 0.47
SCN4AP35499 CCNC-217ENST00000523985 958 ntTSL 2 BASIC17.98■□□□□ 0.47
SCN4AP35499 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.98■□□□□ 0.47
SCN4AP35499 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SCN4AP35499 AC138696.2-201ENST00000607376 223 ntBASIC17.98■□□□□ 0.47
SCN4AP35499 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
SCN4AP35499 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.98■□□□□ 0.47
SCN4AP35499 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
SCN4AP35499 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC17.98■□□□□ 0.47
SCN4AP35499 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SCN4AP35499 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
SCN4AP35499 AC012441.2-201ENST00000444843 739 ntBASIC17.98■□□□□ 0.47
SCN4AP35499 AC027237.1-201ENST00000560942 655 ntBASIC17.98■□□□□ 0.47
SCN4AP35499 AL118516.1-201ENST00000564152 670 ntBASIC17.98■□□□□ 0.47
SCN4AP35499 RN7SL596P-201ENST00000582123 288 ntBASIC17.98■□□□□ 0.47
SCN4AP35499 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC17.98■□□□□ 0.47
SCN4AP35499 AC087392.5-201ENST00000612517 489 ntBASIC17.98■□□□□ 0.47
SCN4AP35499 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
SCN4AP35499 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
SCN4AP35499 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SCN4AP35499 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SCN4AP35499 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 MIR557-201ENST00000385239 98 ntBASIC17.97■□□□□ 0.47
SCN4AP35499 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.97■□□□□ 0.47
SCN4AP35499 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC17.97■□□□□ 0.47
SCN4AP35499 AC138466.5-201ENST00000624002 808 ntBASIC17.97■□□□□ 0.47
SCN4AP35499 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC17.97■□□□□ 0.47
SCN4AP35499 AC092299.1-201ENST00000632679 757 ntBASIC17.97■□□□□ 0.47
SCN4AP35499 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 ALOX12P2-203ENST00000570921 1945 ntBASIC17.97■□□□□ 0.47
SCN4AP35499 INE2-201ENST00000630399 1874 ntBASIC17.97■□□□□ 0.47
SCN4AP35499 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SCN4AP35499 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.97■□□□□ 0.47
SCN4AP35499 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.96■□□□□ 0.47
SCN4AP35499 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SCN4AP35499 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.96■□□□□ 0.47
SCN4AP35499 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN4AP35499 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms