Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
ERCC4Q92889 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
ERCC4Q92889 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ERCC4Q92889 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
ERCC4Q92889 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
ERCC4Q92889 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ERCC4Q92889 AP000842.3-202ENST00000569238 1080 ntBASIC17.85■□□□□ 0.45
ERCC4Q92889 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.85■□□□□ 0.45
ERCC4Q92889 AC024267.1-201ENST00000582320 895 ntBASIC17.85■□□□□ 0.45
ERCC4Q92889 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ERCC4Q92889 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
ERCC4Q92889 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.85■□□□□ 0.45
ERCC4Q92889 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
ERCC4Q92889 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ERCC4Q92889 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.85■□□□□ 0.45
ERCC4Q92889 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.85■□□□□ 0.45
ERCC4Q92889 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
ERCC4Q92889 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
ERCC4Q92889 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 KRT8P44-201ENST00000441609 1350 ntBASIC17.84■□□□□ 0.45
ERCC4Q92889 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.84■□□□□ 0.45
ERCC4Q92889 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.84■□□□□ 0.45
ERCC4Q92889 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.84■□□□□ 0.45
ERCC4Q92889 AC079140.1-201ENST00000508039 487 ntBASIC17.84■□□□□ 0.45
ERCC4Q92889 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.84■□□□□ 0.45
ERCC4Q92889 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.84■□□□□ 0.45
ERCC4Q92889 FAM197Y3-203ENST00000618346 717 ntBASIC17.84■□□□□ 0.45
ERCC4Q92889 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.84■□□□□ 0.45
ERCC4Q92889 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
ERCC4Q92889 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 AC023024.2-201ENST00000623561 1993 ntBASIC17.84■□□□□ 0.45
ERCC4Q92889 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
ERCC4Q92889 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC4Q92889 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC4Q92889 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
ERCC4Q92889 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
ERCC4Q92889 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC4Q92889 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC4Q92889 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
ERCC4Q92889 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC4Q92889 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.83■□□□□ 0.45
ERCC4Q92889 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.83■□□□□ 0.45
ERCC4Q92889 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC4Q92889 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC4Q92889 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 AL022342.1-201ENST00000400363 863 ntBASIC17.83■□□□□ 0.44
ERCC4Q92889 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.83■□□□□ 0.44
ERCC4Q92889 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.83■□□□□ 0.44
ERCC4Q92889 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
ERCC4Q92889 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.83■□□□□ 0.44
ERCC4Q92889 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.83■□□□□ 0.44
ERCC4Q92889 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.83■□□□□ 0.44
ERCC4Q92889 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
ERCC4Q92889 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
ERCC4Q92889 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
ERCC4Q92889 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.83■□□□□ 0.44
ERCC4Q92889 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC4Q92889 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.82■□□□□ 0.44
ERCC4Q92889 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC4Q92889 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
ERCC4Q92889 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
ERCC4Q92889 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
ERCC4Q92889 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC4Q92889 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
ERCC4Q92889 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC4Q92889 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms