Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA1P55317 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.19■□□□□ 0.02
FOXA1P55317 ZBED1P1-201ENST00000502364 1930 ntBASIC15.19■□□□□ 0.02
FOXA1P55317 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
FOXA1P55317 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
FOXA1P55317 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA1P55317 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
FOXA1P55317 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
FOXA1P55317 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.18■□□□□ 0.02
FOXA1P55317 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
FOXA1P55317 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA1P55317 RBPMS2P1-201ENST00000437762 623 ntBASIC15.18■□□□□ 0.02
FOXA1P55317 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.18■□□□□ 0.02
FOXA1P55317 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.18■□□□□ 0.02
FOXA1P55317 YBX1P5-201ENST00000509441 847 ntBASIC15.18■□□□□ 0.02
FOXA1P55317 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.18■□□□□ 0.02
FOXA1P55317 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.18■□□□□ 0.02
FOXA1P55317 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.18■□□□□ 0.02
FOXA1P55317 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA1P55317 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
FOXA1P55317 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 MROH4P-201ENST00000431302 1578 ntBASIC15.18■□□□□ 0.02
FOXA1P55317 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
FOXA1P55317 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA1P55317 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
FOXA1P55317 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA1P55317 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA1P55317 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA1P55317 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
FOXA1P55317 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
FOXA1P55317 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
FOXA1P55317 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.17■□□□□ 0.02
FOXA1P55317 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.17■□□□□ 0.02
FOXA1P55317 AP000347.1-202ENST00000435868 847 ntBASIC15.17■□□□□ 0.02
FOXA1P55317 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.17■□□□□ 0.02
FOXA1P55317 TARDBPP1-201ENST00000442013 1203 ntBASIC15.17■□□□□ 0.02
FOXA1P55317 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.17■□□□□ 0.02
FOXA1P55317 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.17■□□□□ 0.02
FOXA1P55317 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
FOXA1P55317 AC026150.2-201ENST00000564693 1156 ntBASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms