Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AC023141.7-201ENST00000430646 407 ntBASIC11.89□□□□□ -0.51
COL6A5A8TX70 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 LINC00634-202ENST00000505157 222 ntBASIC11.89□□□□□ -0.51
COL6A5A8TX70 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC11.89□□□□□ -0.51
COL6A5A8TX70 AL157813.1-201ENST00000612996 587 ntBASIC11.89□□□□□ -0.51
COL6A5A8TX70 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
COL6A5A8TX70 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC090502.4-201ENST00000551714 1386 ntBASIC11.88□□□□□ -0.51
COL6A5A8TX70 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AL592076.1-201ENST00000424448 303 ntBASIC11.88□□□□□ -0.51
COL6A5A8TX70 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AL592424.1-201ENST00000563624 1536 ntBASIC11.88□□□□□ -0.51
COL6A5A8TX70 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 RPL14-203ENST00000416518 812 ntTSL 3 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC108724.1-201ENST00000481669 352 ntBASIC11.88□□□□□ -0.51
COL6A5A8TX70 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 MIR6769A-201ENST00000617340 73 ntBASIC11.88□□□□□ -0.51
COL6A5A8TX70 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 AC011471.3-201ENST00000623576 402 ntBASIC11.88□□□□□ -0.51
COL6A5A8TX70 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
COL6A5A8TX70 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
COL6A5A8TX70 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC018470.1-201ENST00000624790 3129 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC139713.2-201ENST00000641328 2723 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 B9D1-203ENST00000395615 805 ntTSL 3 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC093909.3-201ENST00000504783 336 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC106820.3-201ENST00000561653 397 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC009093.2-202ENST00000620513 2079 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC067852.2-201ENST00000590513 2313 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 TNXA-203ENST00000507684 2038 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms