Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC9.41□□□□□ -0.9
HSPG2P98160 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC9.41□□□□□ -0.9
HSPG2P98160 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 FKBP4P6-201ENST00000457486 1332 ntBASIC9.41□□□□□ -0.9
HSPG2P98160 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC9.41□□□□□ -0.9
HSPG2P98160 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC9.41□□□□□ -0.9
HSPG2P98160 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC9.41□□□□□ -0.9
HSPG2P98160 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC9.41□□□□□ -0.9
HSPG2P98160 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC9.41□□□□□ -0.9
HSPG2P98160 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC9.41□□□□□ -0.9
HSPG2P98160 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC9.41□□□□□ -0.9
HSPG2P98160 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC9.41□□□□□ -0.9
HSPG2P98160 AC005332.8-201ENST00000622750 2735 ntBASIC9.41□□□□□ -0.9
HSPG2P98160 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
HSPG2P98160 LINC01815-202ENST00000641468 1409 ntBASIC9.41□□□□□ -0.9
HSPG2P98160 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HSPG2P98160 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 SHC1P1-201ENST00000425230 1745 ntBASIC9.4□□□□□ -0.9
HSPG2P98160 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 MIR566-201ENST00000385187 94 ntBASIC9.4□□□□□ -0.9
HSPG2P98160 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC9.4□□□□□ -0.9
HSPG2P98160 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC9.4□□□□□ -0.9
HSPG2P98160 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC9.4□□□□□ -0.9
HSPG2P98160 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC9.4□□□□□ -0.9
HSPG2P98160 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC9.4□□□□□ -0.9
HSPG2P98160 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC9.4□□□□□ -0.9
HSPG2P98160 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
HSPG2P98160 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC9.4□□□□□ -0.9
HSPG2P98160 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC9.4□□□□□ -0.9
HSPG2P98160 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC9.4□□□□□ -0.9
HSPG2P98160 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 AL512306.1-201ENST00000432698 848 ntBASIC9.4□□□□□ -0.9
HSPG2P98160 FAM58BP-201ENST00000439056 645 ntBASIC9.4□□□□□ -0.9
HSPG2P98160 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC9.4□□□□□ -0.9
HSPG2P98160 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 KRT8P31-201ENST00000504812 1408 ntBASIC9.4□□□□□ -0.9
HSPG2P98160 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.9
HSPG2P98160 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
HSPG2P98160 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC9.4□□□□□ -0.9
HSPG2P98160 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC9.4□□□□□ -0.9
HSPG2P98160 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC9.4□□□□□ -0.9
HSPG2P98160 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC9.4□□□□□ -0.9
HSPG2P98160 AC011471.3-201ENST00000623576 402 ntBASIC9.4□□□□□ -0.9
HSPG2P98160 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC9.4□□□□□ -0.9
HSPG2P98160 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.9
HSPG2P98160 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
HSPG2P98160 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC9.4□□□□□ -0.91
HSPG2P98160 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
HSPG2P98160 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
HSPG2P98160 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
HSPG2P98160 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC9.4□□□□□ -0.91
HSPG2P98160 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
HSPG2P98160 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC9.4□□□□□ -0.91
HSPG2P98160 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
HSPG2P98160 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
HSPG2P98160 Z69890.1-201ENST00000382990 339 ntBASIC9.4□□□□□ -0.91
HSPG2P98160 AC006122.1-201ENST00000493323 440 ntBASIC9.4□□□□□ -0.91
HSPG2P98160 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC9.4□□□□□ -0.91
HSPG2P98160 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.91
HSPG2P98160 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC9.4□□□□□ -0.91
HSPG2P98160 CR392039.1-201ENST00000623217 204 ntBASIC9.4□□□□□ -0.91
HSPG2P98160 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
HSPG2P98160 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
HSPG2P98160 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
HSPG2P98160 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
HSPG2P98160 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
HSPG2P98160 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
HSPG2P98160 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
HSPG2P98160 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC9.4□□□□□ -0.91
HSPG2P98160 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.91
HSPG2P98160 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC9.39□□□□□ -0.91
HSPG2P98160 BANP-227ENST00000626016 2144 ntTSL 2 BASIC9.39□□□□□ -0.91
HSPG2P98160 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
HSPG2P98160 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC9.39□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms