Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.16■□□□□ 0.34
CLCN3P51790 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.16■□□□□ 0.34
CLCN3P51790 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.16■□□□□ 0.34
CLCN3P51790 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.16■□□□□ 0.34
CLCN3P51790 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.16■□□□□ 0.34
CLCN3P51790 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.16■□□□□ 0.34
CLCN3P51790 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLCN3P51790 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.15■□□□□ 0.34
CLCN3P51790 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.15■□□□□ 0.34
CLCN3P51790 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.15■□□□□ 0.34
CLCN3P51790 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
CLCN3P51790 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 AP005482.1-201ENST00000563722 1273 ntBASIC17.15■□□□□ 0.34
CLCN3P51790 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.15■□□□□ 0.34
CLCN3P51790 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
CLCN3P51790 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.15■□□□□ 0.34
CLCN3P51790 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CLCN3P51790 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.15■□□□□ 0.34
CLCN3P51790 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CLCN3P51790 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLCN3P51790 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLCN3P51790 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLCN3P51790 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLCN3P51790 AC127383.1-201ENST00000444697 1800 ntBASIC17.14■□□□□ 0.34
CLCN3P51790 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CLCN3P51790 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.14■□□□□ 0.33
CLCN3P51790 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 AC022188.1-201ENST00000620960 1664 ntBASIC17.14■□□□□ 0.33
CLCN3P51790 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 AC092933.1-201ENST00000393644 945 ntBASIC17.14■□□□□ 0.33
CLCN3P51790 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.14■□□□□ 0.33
CLCN3P51790 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.14■□□□□ 0.33
CLCN3P51790 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.14■□□□□ 0.33
CLCN3P51790 BNIP3P42-201ENST00000454982 569 ntBASIC17.14■□□□□ 0.33
CLCN3P51790 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.14■□□□□ 0.33
CLCN3P51790 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.14■□□□□ 0.33
CLCN3P51790 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 BNIP3P29-201ENST00000598302 571 ntBASIC17.14■□□□□ 0.33
CLCN3P51790 AC011447.5-201ENST00000616168 564 ntBASIC17.14■□□□□ 0.33
CLCN3P51790 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.14■□□□□ 0.33
CLCN3P51790 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
CLCN3P51790 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCN3P51790 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms