Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 AL513523.2-202ENST00000427283 2040 ntBASIC20.37■□□□□ 0.85
USP54Q70EL1 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC20.37■□□□□ 0.85
USP54Q70EL1 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP54Q70EL1 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.36■□□□□ 0.85
USP54Q70EL1 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
USP54Q70EL1 TUBBP5-203ENST00000508529 1334 ntBASIC20.36■□□□□ 0.85
USP54Q70EL1 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC20.36■□□□□ 0.85
USP54Q70EL1 PTPA-217ENST00000434095 870 ntTSL 2 BASIC20.36■□□□□ 0.85
USP54Q70EL1 RN7SL11P-201ENST00000471305 293 ntBASIC20.36■□□□□ 0.85
USP54Q70EL1 CDC23-208ENST00000505120 455 ntTSL 3 BASIC20.36■□□□□ 0.85
USP54Q70EL1 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC20.36■□□□□ 0.85
USP54Q70EL1 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
USP54Q70EL1 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC20.36■□□□□ 0.85
USP54Q70EL1 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC20.36■□□□□ 0.85
USP54Q70EL1 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
USP54Q70EL1 AC009779.1-201ENST00000551138 283 ntBASIC20.36■□□□□ 0.85
USP54Q70EL1 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
USP54Q70EL1 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC20.36■□□□□ 0.85
USP54Q70EL1 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC20.36■□□□□ 0.85
USP54Q70EL1 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
USP54Q70EL1 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
USP54Q70EL1 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP54Q70EL1 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC20.35■□□□□ 0.85
USP54Q70EL1 HLA-J-204ENST00000495278 958 ntBASIC20.35■□□□□ 0.85
USP54Q70EL1 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 AC026434.2-201ENST00000506094 1078 ntBASIC20.35■□□□□ 0.85
USP54Q70EL1 AC024681.1-201ENST00000521917 487 ntBASIC20.35■□□□□ 0.85
USP54Q70EL1 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
USP54Q70EL1 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
USP54Q70EL1 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC20.35■□□□□ 0.85
USP54Q70EL1 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC20.35■□□□□ 0.85
USP54Q70EL1 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC20.35■□□□□ 0.85
USP54Q70EL1 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
USP54Q70EL1 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
USP54Q70EL1 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
USP54Q70EL1 KRT8P29-201ENST00000420409 1371 ntBASIC20.35■□□□□ 0.85
USP54Q70EL1 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC20.35■□□□□ 0.85
USP54Q70EL1 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
USP54Q70EL1 MIR769-201ENST00000390225 118 ntBASIC20.35■□□□□ 0.85
USP54Q70EL1 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC20.35■□□□□ 0.85
USP54Q70EL1 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
USP54Q70EL1 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC20.35■□□□□ 0.85
USP54Q70EL1 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
USP54Q70EL1 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP54Q70EL1 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
USP54Q70EL1 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP54Q70EL1 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
USP54Q70EL1 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
USP54Q70EL1 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP54Q70EL1 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC20.34■□□□□ 0.85
USP54Q70EL1 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC20.34■□□□□ 0.85
USP54Q70EL1 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC20.34■□□□□ 0.85
USP54Q70EL1 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC20.34■□□□□ 0.85
USP54Q70EL1 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
USP54Q70EL1 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
USP54Q70EL1 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
USP54Q70EL1 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
USP54Q70EL1 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC20.34■□□□□ 0.85
USP54Q70EL1 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP54Q70EL1 SLC16A6P1-201ENST00000413214 1059 ntBASIC20.34■□□□□ 0.85
USP54Q70EL1 VDAC1P1-201ENST00000439229 848 ntBASIC20.34■□□□□ 0.85
USP54Q70EL1 RNMTL1P1-201ENST00000454103 560 ntBASIC20.34■□□□□ 0.85
USP54Q70EL1 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
USP54Q70EL1 TMEM198B-204ENST00000484016 896 ntBASIC20.34■□□□□ 0.85
USP54Q70EL1 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC20.34■□□□□ 0.85
USP54Q70EL1 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC20.34■□□□□ 0.85
USP54Q70EL1 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
USP54Q70EL1 AC128714.1-201ENST00000637035 887 ntBASIC20.34■□□□□ 0.85
USP54Q70EL1 AC004899.1-201ENST00000424687 1714 ntBASIC20.34■□□□□ 0.85
USP54Q70EL1 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP54Q70EL1 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
USP54Q70EL1 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
USP54Q70EL1 INE2-201ENST00000630399 1874 ntBASIC20.34■□□□□ 0.85
USP54Q70EL1 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
USP54Q70EL1 REXO1L5P-201ENST00000622260 2098 ntBASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms