Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC022188.1-201ENST00000620960 1664 ntBASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 CFL1-206ENST00000527344 962 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 ZACNP1-201ENST00000612259 710 ntBASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 AC011477.6-201ENST00000604980 1927 ntBASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 AC112504.1-201ENST00000623415 1841 ntBASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC88AQ3V6T2 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 HIST2H2BB-201ENST00000449108 381 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 CEP164P1-201ENST00000455142 418 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 ATP6V0CP2-201ENST00000469409 207 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 GAPDHP40-201ENST00000505218 1006 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 NCK2-206ENST00000522586 490 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 AC103988.2-201ENST00000561804 725 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 MIR4313-201ENST00000580760 101 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 AC022748.3-201ENST00000621828 275 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 AL603832.2-201ENST00000566195 2125 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 EIF3FP3-201ENST00000434851 1086 ntBASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC88AQ3V6T2 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 LRRC59-203ENST00000576448 1531 ntBASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 AL596087.1-201ENST00000400979 1969 ntBASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC88AQ3V6T2 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms