Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH6P52701 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH6P52701 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
MSH6P52701 PCDHA12-202ENST00000613593 2588 ntBASIC21.4■■□□□ 1.02
MSH6P52701 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
MSH6P52701 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC21.4■■□□□ 1.02
MSH6P52701 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 AC004899.1-201ENST00000424687 1714 ntBASIC21.4■■□□□ 1.02
MSH6P52701 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 KRT8P14-201ENST00000414254 1442 ntBASIC21.4■■□□□ 1.02
MSH6P52701 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
MSH6P52701 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
MSH6P52701 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH6P52701 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
MSH6P52701 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
MSH6P52701 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH6P52701 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
MSH6P52701 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH6P52701 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
MSH6P52701 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH6P52701 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH6P52701 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
MSH6P52701 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH6P52701 TUBB8P8-201ENST00000458717 1058 ntBASIC21.39■■□□□ 1.02
MSH6P52701 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC21.39■■□□□ 1.02
MSH6P52701 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC21.39■■□□□ 1.02
MSH6P52701 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC21.39■■□□□ 1.02
MSH6P52701 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH6P52701 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
MSH6P52701 INO80C-210ENST00000590757 595 ntTSL 2 BASIC21.39■■□□□ 1.02
MSH6P52701 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC21.39■■□□□ 1.02
MSH6P52701 AC087045.2-201ENST00000606279 1003 ntBASIC21.39■■□□□ 1.02
MSH6P52701 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC21.39■■□□□ 1.02
MSH6P52701 AC068587.8-201ENST00000641239 219 ntBASIC21.39■■□□□ 1.02
MSH6P52701 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH6P52701 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
MSH6P52701 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH6P52701 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH6P52701 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC21.39■■□□□ 1.01
MSH6P52701 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC21.39■■□□□ 1.01
MSH6P52701 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
MSH6P52701 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH6P52701 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH6P52701 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH6P52701 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH6P52701 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
MSH6P52701 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
MSH6P52701 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
MSH6P52701 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
MSH6P52701 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
MSH6P52701 AC078991.1-201ENST00000437297 610 ntBASIC21.38■■□□□ 1.01
MSH6P52701 AC104073.2-201ENST00000453737 312 ntBASIC21.38■■□□□ 1.01
MSH6P52701 AC092171.5-201ENST00000608012 942 ntBASIC21.38■■□□□ 1.01
MSH6P52701 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH6P52701 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH6P52701 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
MSH6P52701 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH6P52701 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
MSH6P52701 CYP51A1P3-201ENST00000400072 1428 ntBASIC21.38■■□□□ 1.01
MSH6P52701 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
MSH6P52701 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH6P52701 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 MVK-214ENST00000629016 1591 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH6P52701 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH6P52701 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
MSH6P52701 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC21.37■■□□□ 1.01
MSH6P52701 GHSR-202ENST00000427970 912 ntBASIC21.37■■□□□ 1.01
MSH6P52701 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC21.37■■□□□ 1.01
MSH6P52701 NEU3-205ENST00000531619 582 ntTSL 5 BASIC21.37■■□□□ 1.01
MSH6P52701 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
MSH6P52701 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC21.37■■□□□ 1.01
MSH6P52701 MIR4754-201ENST00000582477 89 ntBASIC21.37■■□□□ 1.01
MSH6P52701 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 YRDCP1-201ENST00000621419 643 ntBASIC21.37■■□□□ 1.01
MSH6P52701 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH6P52701 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH6P52701 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms