Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXD3P31249 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
HOXD3P31249 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.19□□□□□ -0.46
HOXD3P31249 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HOXD3P31249 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.19□□□□□ -0.46
HOXD3P31249 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC12.19□□□□□ -0.46
HOXD3P31249 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
HOXD3P31249 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC12.19□□□□□ -0.46
HOXD3P31249 MIR6799-201ENST00000620297 69 ntBASIC12.19□□□□□ -0.46
HOXD3P31249 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC12.19□□□□□ -0.46
HOXD3P31249 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC12.19□□□□□ -0.46
HOXD3P31249 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
HOXD3P31249 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 LINC02199-201ENST00000506655 2702 ntBASIC12.18□□□□□ -0.46
HOXD3P31249 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.18□□□□□ -0.46
HOXD3P31249 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 AC079776.1-201ENST00000401540 1152 ntBASIC12.18□□□□□ -0.46
HOXD3P31249 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 RPS2P32-201ENST00000439199 892 ntBASIC12.18□□□□□ -0.46
HOXD3P31249 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 TIMM17BP1-201ENST00000545713 516 ntBASIC12.18□□□□□ -0.46
HOXD3P31249 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXD3P31249 NAA38-206ENST00000576384 424 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 CTBP2P3-201ENST00000585629 1255 ntBASIC12.18□□□□□ -0.46
HOXD3P31249 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HOXD3P31249 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 VILL-207ENST00000465644 1857 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
HOXD3P31249 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXD3P31249 Z97205.2-201ENST00000564697 1639 ntBASIC12.18□□□□□ -0.46
HOXD3P31249 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXD3P31249 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms