Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
MSH4O15457 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
MSH4O15457 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
MSH4O15457 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.55■□□□□ 0.4
MSH4O15457 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH4O15457 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MSH4O15457 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH4O15457 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH4O15457 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH4O15457 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.55■□□□□ 0.4
MSH4O15457 RPL13AP25-201ENST00000484130 612 ntBASIC17.55■□□□□ 0.4
MSH4O15457 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.55■□□□□ 0.4
MSH4O15457 AC120045.2-201ENST00000567334 178 ntBASIC17.55■□□□□ 0.4
MSH4O15457 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.55■□□□□ 0.4
MSH4O15457 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MSH4O15457 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
MSH4O15457 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.55■□□□□ 0.4
MSH4O15457 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
MSH4O15457 IGHV3-72-202ENST00000621503 303 ntBASIC17.55■□□□□ 0.4
MSH4O15457 RPSAP52-203ENST00000622976 1023 ntBASIC17.55■□□□□ 0.4
MSH4O15457 AL035252.4-201ENST00000624174 288 ntBASIC17.55■□□□□ 0.4
MSH4O15457 AL033527.5-201ENST00000641382 801 ntBASIC17.55■□□□□ 0.4
MSH4O15457 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.55■□□□□ 0.4
MSH4O15457 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH4O15457 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
MSH4O15457 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH4O15457 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.54■□□□□ 0.4
MSH4O15457 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.54■□□□□ 0.4
MSH4O15457 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.54■□□□□ 0.4
MSH4O15457 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
MSH4O15457 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.54■□□□□ 0.4
MSH4O15457 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
MSH4O15457 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.54■□□□□ 0.4
MSH4O15457 AC005034.1-201ENST00000426657 489 ntBASIC17.54■□□□□ 0.4
MSH4O15457 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH4O15457 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.54■□□□□ 0.4
MSH4O15457 RN7SL837P-201ENST00000463010 287 ntBASIC17.54■□□□□ 0.4
MSH4O15457 CR383656.12-201ENST00000549567 513 ntBASIC17.54■□□□□ 0.4
MSH4O15457 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.54■□□□□ 0.4
MSH4O15457 AC133539.2-201ENST00000604757 467 ntBASIC17.54■□□□□ 0.4
MSH4O15457 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.54■□□□□ 0.4
MSH4O15457 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH4O15457 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH4O15457 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH4O15457 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.54■□□□□ 0.4
MSH4O15457 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
MSH4O15457 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms