Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 AC087499.5-201ENST00000452760 1342 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 AC015922.1-201ENST00000421102 1152 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 AC009477.1-201ENST00000452936 217 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 AL139010.1-201ENST00000454878 894 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 AC135586.1-201ENST00000539323 574 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 AC010336.2-201ENST00000564226 506 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 AL109936.8-201ENST00000641772 604 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 PRAL-201ENST00000624952 3286 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 AC104794.3-201ENST00000566840 1248 ntBASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 AC004233.3-201ENST00000607794 1269 ntBASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 AC018892.3-201ENST00000623986 2499 ntBASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP4CQ96CF2 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 RN7SL618P-201ENST00000477850 296 ntBASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms