Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 MIR3621-201ENST00000580529 85 ntBASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNFT1Q5M7Z0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.2■□□□□ 0.98
RNFT1Q5M7Z0 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.2■□□□□ 0.98
RNFT1Q5M7Z0 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
RNFT1Q5M7Z0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.19■□□□□ 0.98
RNFT1Q5M7Z0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.19■□□□□ 0.98
RNFT1Q5M7Z0 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
RNFT1Q5M7Z0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.19■□□□□ 0.98
RNFT1Q5M7Z0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
RNFT1Q5M7Z0 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RNFT1Q5M7Z0 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.18■□□□□ 0.98
RNFT1Q5M7Z0 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.18■□□□□ 0.98
RNFT1Q5M7Z0 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.18■□□□□ 0.98
RNFT1Q5M7Z0 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.18■□□□□ 0.98
RNFT1Q5M7Z0 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNFT1Q5M7Z0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNFT1Q5M7Z0 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNFT1Q5M7Z0 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.17■□□□□ 0.98
RNFT1Q5M7Z0 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNFT1Q5M7Z0 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.16■□□□□ 0.98
RNFT1Q5M7Z0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNFT1Q5M7Z0 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.16■□□□□ 0.98
RNFT1Q5M7Z0 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.16■□□□□ 0.98
RNFT1Q5M7Z0 SNX5-217ENST00000606557 1087 ntBASIC21.16■□□□□ 0.98
RNFT1Q5M7Z0 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNFT1Q5M7Z0 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.15■□□□□ 0.98
RNFT1Q5M7Z0 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNFT1Q5M7Z0 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
RNFT1Q5M7Z0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
RNFT1Q5M7Z0 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
RNFT1Q5M7Z0 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNFT1Q5M7Z0 AL136116.3-201ENST00000402907 1138 ntBASIC21.14■□□□□ 0.97
RNFT1Q5M7Z0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.14■□□□□ 0.97
RNFT1Q5M7Z0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.14■□□□□ 0.97
RNFT1Q5M7Z0 AL356740.2-201ENST00000601559 647 ntBASIC21.14■□□□□ 0.97
RNFT1Q5M7Z0 MIR4466-201ENST00000606121 54 ntBASIC21.14■□□□□ 0.97
RNFT1Q5M7Z0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RNFT1Q5M7Z0 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNFT1Q5M7Z0 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RNFT1Q5M7Z0 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RNFT1Q5M7Z0 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RNFT1Q5M7Z0 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNFT1Q5M7Z0 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNFT1Q5M7Z0 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.12■□□□□ 0.97
RNFT1Q5M7Z0 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNFT1Q5M7Z0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 AL512631.2-201ENST00000604634 923 ntBASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RNFT1Q5M7Z0 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.1■□□□□ 0.97
RNFT1Q5M7Z0 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.1■□□□□ 0.97
RNFT1Q5M7Z0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNFT1Q5M7Z0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
RNFT1Q5M7Z0 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNFT1Q5M7Z0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNFT1Q5M7Z0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.1■□□□□ 0.97
RNFT1Q5M7Z0 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNFT1Q5M7Z0 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RNFT1Q5M7Z0 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.08■□□□□ 0.97
RNFT1Q5M7Z0 SLC6A10P-202ENST00000431994 2058 ntBASIC21.08■□□□□ 0.97
RNFT1Q5M7Z0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNFT1Q5M7Z0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNFT1Q5M7Z0 MIR638-201ENST00000385237 100 ntBASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms