Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.78■□□□□ 0.44
CCNA1P78396 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCNA1P78396 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCNA1P78396 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 ACTBP8-201ENST00000403258 1108 ntBASIC17.78■□□□□ 0.44
CCNA1P78396 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.78■□□□□ 0.44
CCNA1P78396 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.78■□□□□ 0.44
CCNA1P78396 HOMER2P2-201ENST00000451621 847 ntBASIC17.78■□□□□ 0.44
CCNA1P78396 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.78■□□□□ 0.44
CCNA1P78396 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCNA1P78396 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.78■□□□□ 0.44
CCNA1P78396 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.78■□□□□ 0.44
CCNA1P78396 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.78■□□□□ 0.44
CCNA1P78396 EEF1DP1-201ENST00000585891 896 ntBASIC17.78■□□□□ 0.44
CCNA1P78396 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCNA1P78396 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCNA1P78396 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNA1P78396 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CCNA1P78396 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.77■□□□□ 0.44
CCNA1P78396 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.77■□□□□ 0.44
CCNA1P78396 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.77■□□□□ 0.44
CCNA1P78396 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 MPV17-205ENST00000402310 906 ntTSL 5 BASIC17.77■□□□□ 0.44
CCNA1P78396 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.77■□□□□ 0.44
CCNA1P78396 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.77■□□□□ 0.44
CCNA1P78396 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.77■□□□□ 0.44
CCNA1P78396 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CCNA1P78396 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCNA1P78396 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CCNA1P78396 RN7SL48P-201ENST00000579283 293 ntBASIC17.77■□□□□ 0.44
CCNA1P78396 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.77■□□□□ 0.44
CCNA1P78396 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CCNA1P78396 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.77■□□□□ 0.44
CCNA1P78396 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.77■□□□□ 0.43
CCNA1P78396 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.77■□□□□ 0.43
CCNA1P78396 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
CCNA1P78396 AC015818.8-201ENST00000587907 1519 ntBASIC17.77■□□□□ 0.43
CCNA1P78396 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
CCNA1P78396 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCNA1P78396 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
CCNA1P78396 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.77■□□□□ 0.43
CCNA1P78396 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCNA1P78396 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCNA1P78396 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCNA1P78396 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.76■□□□□ 0.43
CCNA1P78396 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CCNA1P78396 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCNA1P78396 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCNA1P78396 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCNA1P78396 FLJ38576-201ENST00000623820 2459 ntBASIC17.76■□□□□ 0.43
CCNA1P78396 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
CCNA1P78396 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCNA1P78396 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.76■□□□□ 0.43
CCNA1P78396 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms