Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MIR1909-201ENST00000411312 80 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 PIN1P1-201ENST00000412108 996 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AC017083.2-201ENST00000608069 979 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AL391069.4-201ENST00000609583 481 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AC004461.2-201ENST00000629517 803 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AL121723.1-201ENST00000445194 1519 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AC022532.1-201ENST00000624563 1728 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 HLA-V-204ENST00000476601 1289 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AL109954.1-202ENST00000564051 2148 ntBASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 AC092384.3-202ENST00000564646 2873 ntBASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 AC087481.3-201ENST00000602886 1894 ntBASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 SLC7A15P-201ENST00000424028 1363 ntBASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHROOM3Q8TF72 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 NME2P1-201ENST00000426182 414 ntBASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 RPS2P32-201ENST00000439199 892 ntBASIC16.04■□□□□ 0.16
SHROOM3Q8TF72 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms