Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 AC126177.1-201ENST00000547829 2218 ntBASIC14.95□□□□□ -0.02
RFX3P48380 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 AC254562.1-201ENST00000417586 456 ntBASIC14.95□□□□□ -0.02
RFX3P48380 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.95□□□□□ -0.02
RFX3P48380 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.95□□□□□ -0.02
RFX3P48380 AC003101.2-201ENST00000612557 442 ntBASIC14.95□□□□□ -0.02
RFX3P48380 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
RFX3P48380 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
RFX3P48380 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.94□□□□□ -0.02
RFX3P48380 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
RFX3P48380 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.94□□□□□ -0.02
RFX3P48380 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
RFX3P48380 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 FAM220BP-201ENST00000377689 816 ntBASIC14.94□□□□□ -0.02
RFX3P48380 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.94□□□□□ -0.02
RFX3P48380 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.94□□□□□ -0.02
RFX3P48380 ALG1L8P-201ENST00000533887 760 ntBASIC14.94□□□□□ -0.02
RFX3P48380 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
RFX3P48380 RARRES2P9-201ENST00000565168 469 ntBASIC14.94□□□□□ -0.02
RFX3P48380 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.94□□□□□ -0.02
RFX3P48380 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.94□□□□□ -0.02
RFX3P48380 AC061975.2-201ENST00000581722 295 ntBASIC14.94□□□□□ -0.02
RFX3P48380 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.94□□□□□ -0.02
RFX3P48380 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.94□□□□□ -0.02
RFX3P48380 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.94□□□□□ -0.02
RFX3P48380 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 AC079781.4-201ENST00000641908 219 ntBASIC14.94□□□□□ -0.02
RFX3P48380 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.94□□□□□ -0.02
RFX3P48380 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.94□□□□□ -0.02
RFX3P48380 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.94□□□□□ -0.02
RFX3P48380 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
RFX3P48380 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
RFX3P48380 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
RFX3P48380 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
RFX3P48380 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.93□□□□□ -0.02
RFX3P48380 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
RFX3P48380 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
RFX3P48380 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.93□□□□□ -0.02
RFX3P48380 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
RFX3P48380 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
RFX3P48380 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.93□□□□□ -0.02
RFX3P48380 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
RFX3P48380 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.93□□□□□ -0.02
RFX3P48380 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms