Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 AC138932.2-201ENST00000548268 1459 ntBASIC14.1□□□□□ -0.15
HOXC12P31275 AC126755.4-201ENST00000549796 1459 ntBASIC14.1□□□□□ -0.15
HOXC12P31275 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HOXC12P31275 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXC12P31275 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXC12P31275 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HOXC12P31275 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.1□□□□□ -0.15
HOXC12P31275 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXC12P31275 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.1□□□□□ -0.15
HOXC12P31275 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.1□□□□□ -0.15
HOXC12P31275 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.1□□□□□ -0.15
HOXC12P31275 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
HOXC12P31275 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
HOXC12P31275 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 AC068418.2-201ENST00000577309 3703 ntBASIC14.09□□□□□ -0.15
HOXC12P31275 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
HOXC12P31275 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.09□□□□□ -0.15
HOXC12P31275 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.09□□□□□ -0.15
HOXC12P31275 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 HILS1-202ENST00000545329 423 ntBASIC14.09□□□□□ -0.15
HOXC12P31275 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXC12P31275 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.09□□□□□ -0.15
HOXC12P31275 MIR6069-201ENST00000620069 79 ntBASIC14.09□□□□□ -0.15
HOXC12P31275 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXC12P31275 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXC12P31275 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXC12P31275 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXC12P31275 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXC12P31275 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXC12P31275 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
HOXC12P31275 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HOXC12P31275 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HOXC12P31275 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.08□□□□□ -0.15
HOXC12P31275 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HOXC12P31275 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXC12P31275 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXC12P31275 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXC12P31275 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HOXC12P31275 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXC12P31275 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXC12P31275 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXC12P31275 AC007541.1-201ENST00000570282 1469 ntBASIC14.08□□□□□ -0.16
HOXC12P31275 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXC12P31275 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXC12P31275 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HOXC12P31275 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 AC004987.2-201ENST00000395959 1148 ntBASIC14.08□□□□□ -0.16
HOXC12P31275 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXC12P31275 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXC12P31275 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXC12P31275 AC009477.1-201ENST00000452936 217 ntBASIC14.08□□□□□ -0.16
HOXC12P31275 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXC12P31275 GIMAP3P-201ENST00000495150 836 ntBASIC14.08□□□□□ -0.16
HOXC12P31275 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXC12P31275 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXC12P31275 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms