Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
MSX1P28360 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
MSX1P28360 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
MSX1P28360 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MSX1P28360 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MSX1P28360 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.52□□□□□ -0.08
MSX1P28360 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.52□□□□□ -0.08
MSX1P28360 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.52□□□□□ -0.08
MSX1P28360 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
MSX1P28360 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MSX1P28360 CU639417.3-201ENST00000624240 1404 ntBASIC14.52□□□□□ -0.08
MSX1P28360 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
MSX1P28360 AC087499.5-201ENST00000452760 1342 ntBASIC14.52□□□□□ -0.08
MSX1P28360 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.52□□□□□ -0.08
MSX1P28360 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
MSX1P28360 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
MSX1P28360 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.52□□□□□ -0.09
MSX1P28360 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
MSX1P28360 KRT17P7-201ENST00000451704 1104 ntBASIC14.52□□□□□ -0.09
MSX1P28360 AC009477.1-201ENST00000452936 217 ntBASIC14.52□□□□□ -0.09
MSX1P28360 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.52□□□□□ -0.09
MSX1P28360 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.52□□□□□ -0.09
MSX1P28360 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.52□□□□□ -0.09
MSX1P28360 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.52□□□□□ -0.09
MSX1P28360 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.52□□□□□ -0.09
MSX1P28360 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC14.52□□□□□ -0.09
MSX1P28360 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
MSX1P28360 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.52□□□□□ -0.09
MSX1P28360 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
MSX1P28360 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.52□□□□□ -0.09
MSX1P28360 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX1P28360 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.52□□□□□ -0.09
MSX1P28360 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
MSX1P28360 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.52□□□□□ -0.09
MSX1P28360 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX1P28360 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 AC068418.2-201ENST00000577309 3703 ntBASIC14.51□□□□□ -0.09
MSX1P28360 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
MSX1P28360 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX1P28360 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
MSX1P28360 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
MSX1P28360 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX1P28360 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.51□□□□□ -0.09
MSX1P28360 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 HIST3H2BA-201ENST00000436555 524 ntBASIC14.51□□□□□ -0.09
MSX1P28360 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX1P28360 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX1P28360 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX1P28360 RN7SL618P-201ENST00000477850 296 ntBASIC14.51□□□□□ -0.09
MSX1P28360 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX1P28360 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX1P28360 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
MSX1P28360 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.51□□□□□ -0.09
MSX1P28360 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
MSX1P28360 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX1P28360 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX1P28360 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX1P28360 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms