Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AP001889.1-201ENST00000525414 633 ntBASIC15.32■□□□□ 0.04
HOXC4P09017 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.32■□□□□ 0.04
HOXC4P09017 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC4P09017 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.32■□□□□ 0.04
HOXC4P09017 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC4P09017 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC4P09017 AC025181.2-201ENST00000606994 802 ntBASIC15.32■□□□□ 0.04
HOXC4P09017 AL008721.1-201ENST00000609964 604 ntBASIC15.32■□□□□ 0.04
HOXC4P09017 MIR6805-201ENST00000615055 62 ntBASIC15.32■□□□□ 0.04
HOXC4P09017 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
HOXC4P09017 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC4P09017 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HOXC4P09017 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC4P09017 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC4P09017 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HOXC4P09017 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 AL138799.1-201ENST00000448213 1675 ntBASIC15.32■□□□□ 0.04
HOXC4P09017 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 AC012441.1-201ENST00000446669 685 ntBASIC15.31■□□□□ 0.04
HOXC4P09017 AC022137.2-201ENST00000503482 481 ntBASIC15.31■□□□□ 0.04
HOXC4P09017 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
HOXC4P09017 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.31■□□□□ 0.04
HOXC4P09017 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 AC084018.2-201ENST00000613093 2607 ntBASIC15.31■□□□□ 0.04
HOXC4P09017 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 AC018665.1-201ENST00000622927 1362 ntBASIC15.31■□□□□ 0.04
HOXC4P09017 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.31■□□□□ 0.04
HOXC4P09017 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HOXC4P09017 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HOXC4P09017 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HOXC4P09017 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC4P09017 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HOXC4P09017 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.3■□□□□ 0.04
HOXC4P09017 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.3■□□□□ 0.04
HOXC4P09017 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.3■□□□□ 0.04
HOXC4P09017 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 RPL5P21-201ENST00000404620 815 ntBASIC15.3■□□□□ 0.04
HOXC4P09017 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.3■□□□□ 0.04
HOXC4P09017 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HOXC4P09017 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HOXC4P09017 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.3■□□□□ 0.04
HOXC4P09017 AC234783.1-201ENST00000441761 496 ntBASIC15.3■□□□□ 0.04
HOXC4P09017 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.3■□□□□ 0.04
HOXC4P09017 AC022210.1-201ENST00000449856 793 ntBASIC15.3■□□□□ 0.04
HOXC4P09017 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.3■□□□□ 0.04
HOXC4P09017 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.3■□□□□ 0.04
HOXC4P09017 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.3■□□□□ 0.04
HOXC4P09017 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
HOXC4P09017 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC4P09017 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms