Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
MSH5O43196 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
MSH5O43196 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
MSH5O43196 LECT2-201ENST00000274507 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
MSH5O43196 NABP1-203ENST00000409510 843 ntTSL 5 BASIC22.22■■□□□ 1.15
MSH5O43196 AC007274.1-201ENST00000439805 662 ntBASIC22.22■■□□□ 1.15
MSH5O43196 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC22.22■■□□□ 1.15
MSH5O43196 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC22.22■■□□□ 1.15
MSH5O43196 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC22.22■■□□□ 1.15
MSH5O43196 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 BLOC1S6-208ENST00000565323 688 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH5O43196 NAA60-208ENST00000570819 833 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH5O43196 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 AC134407.1-201ENST00000577385 709 ntTSL 3 BASIC22.22■■□□□ 1.15
MSH5O43196 AC022400.7-201ENST00000625041 1236 ntBASIC22.22■■□□□ 1.15
MSH5O43196 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
MSH5O43196 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC22.22■■□□□ 1.15
MSH5O43196 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC22.22■■□□□ 1.15
MSH5O43196 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
MSH5O43196 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH5O43196 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
MSH5O43196 INE2-201ENST00000630399 1874 ntBASIC22.22■■□□□ 1.15
MSH5O43196 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH5O43196 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
MSH5O43196 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 MIR620-201ENST00000385232 95 ntBASIC22.21■■□□□ 1.15
MSH5O43196 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 AL627223.1-201ENST00000416693 442 ntBASIC22.21■■□□□ 1.15
MSH5O43196 NPHP1-205ENST00000418527 742 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC22.21■■□□□ 1.15
MSH5O43196 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 DDX43P3-201ENST00000441064 443 ntBASIC22.21■■□□□ 1.15
MSH5O43196 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC22.21■■□□□ 1.15
MSH5O43196 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC22.21■■□□□ 1.15
MSH5O43196 STK19B-204ENST00000512515 211 ntBASIC22.21■■□□□ 1.15
MSH5O43196 DUXAP5-201ENST00000529668 529 ntBASIC22.21■■□□□ 1.15
MSH5O43196 AC069503.1-201ENST00000538710 816 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 AC109462.3-201ENST00000573934 613 ntBASIC22.21■■□□□ 1.15
MSH5O43196 RN7SL204P-201ENST00000582831 262 ntBASIC22.21■■□□□ 1.15
MSH5O43196 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC22.21■■□□□ 1.15
MSH5O43196 AC010615.2-205ENST00000599993 929 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 Z94722.1-201ENST00000604328 474 ntBASIC22.21■■□□□ 1.15
MSH5O43196 AL008721.1-201ENST00000609964 604 ntBASIC22.21■■□□□ 1.15
MSH5O43196 AC010809.3-201ENST00000621310 641 ntBASIC22.21■■□□□ 1.15
MSH5O43196 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC22.21■■□□□ 1.15
MSH5O43196 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
MSH5O43196 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH5O43196 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
MSH5O43196 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
MSH5O43196 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH5O43196 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH5O43196 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 MIR943-201ENST00000401286 94 ntBASIC22.2■■□□□ 1.14
MSH5O43196 CENPM-205ENST00000404067 905 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH5O43196 AC055876.3-201ENST00000431496 288 ntBASIC22.2■■□□□ 1.14
MSH5O43196 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC22.2■■□□□ 1.14
MSH5O43196 GATB-205ENST00000508611 605 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH5O43196 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH5O43196 OR4R3P-201ENST00000525084 838 ntBASIC22.2■■□□□ 1.14
MSH5O43196 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC22.2■■□□□ 1.14
MSH5O43196 AC009090.1-201ENST00000562409 358 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH5O43196 ARL6IP1-204ENST00000562819 578 ntTSL 5 BASIC22.2■■□□□ 1.14
MSH5O43196 AC004232.2-201ENST00000574245 821 ntBASIC22.2■■□□□ 1.14
MSH5O43196 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH5O43196 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC22.2■■□□□ 1.14
MSH5O43196 AC011451.2-201ENST00000604303 598 ntBASIC22.2■■□□□ 1.14
MSH5O43196 AC138649.4-201ENST00000612222 287 ntBASIC22.2■■□□□ 1.14
MSH5O43196 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH5O43196 AC004808.1-201ENST00000627671 721 ntBASIC22.2■■□□□ 1.14
MSH5O43196 AC092192.1-201ENST00000633154 1018 ntBASIC22.2■■□□□ 1.14
MSH5O43196 AC109635.4-201ENST00000636653 1005 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC22.2■■□□□ 1.14
MSH5O43196 AL033527.5-201ENST00000641382 801 ntBASIC22.2■■□□□ 1.14
MSH5O43196 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH5O43196 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms