Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC022532.1-201ENST00000624563 1728 ntBASIC14.99□□□□□ -0.01
SOX3P41225 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.99□□□□□ -0.01
SOX3P41225 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.99□□□□□ -0.01
SOX3P41225 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SOX3P41225 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.99□□□□□ -0.01
SOX3P41225 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
SOX3P41225 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SOX3P41225 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SOX3P41225 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SOX3P41225 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.98□□□□□ -0.01
SOX3P41225 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SOX3P41225 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.98□□□□□ -0.01
SOX3P41225 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.98□□□□□ -0.01
SOX3P41225 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.98□□□□□ -0.01
SOX3P41225 MTND6P24-201ENST00000440466 518 ntBASIC14.98□□□□□ -0.01
SOX3P41225 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.98□□□□□ -0.01
SOX3P41225 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
SOX3P41225 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.98□□□□□ -0.01
SOX3P41225 AC097493.3-201ENST00000509725 367 ntBASIC14.98□□□□□ -0.01
SOX3P41225 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.98□□□□□ -0.01
SOX3P41225 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.98□□□□□ -0.01
SOX3P41225 AL390754.1-201ENST00000619088 582 ntBASIC14.98□□□□□ -0.01
SOX3P41225 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.98□□□□□ -0.01
SOX3P41225 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.98□□□□□ -0.01
SOX3P41225 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.98□□□□□ -0.01
SOX3P41225 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SOX3P41225 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.98□□□□□ -0.01
SOX3P41225 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SOX3P41225 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SOX3P41225 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.97□□□□□ -0.01
SOX3P41225 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SOX3P41225 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.97□□□□□ -0.01
SOX3P41225 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.97□□□□□ -0.01
SOX3P41225 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.97□□□□□ -0.01
SOX3P41225 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SOX3P41225 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms