Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC127383.1-201ENST00000444697 1800 ntBASIC18.2■□□□□ 0.5
COL2A1P02458 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL2A1P02458 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.19■□□□□ 0.5
COL2A1P02458 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC18.19■□□□□ 0.5
COL2A1P02458 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
COL2A1P02458 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.19■□□□□ 0.5
COL2A1P02458 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL2A1P02458 FZD10-202ENST00000539839 3282 ntBASIC18.19■□□□□ 0.5
COL2A1P02458 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL2A1P02458 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 MIR326-201ENST00000362220 95 ntBASIC18.19■□□□□ 0.5
COL2A1P02458 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC18.19■□□□□ 0.5
COL2A1P02458 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
COL2A1P02458 MTX1P1-201ENST00000440904 838 ntBASIC18.19■□□□□ 0.5
COL2A1P02458 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC18.19■□□□□ 0.5
COL2A1P02458 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC18.19■□□□□ 0.5
COL2A1P02458 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.19■□□□□ 0.5
COL2A1P02458 PRKN-211ENST00000615065 261 ntTSL 5 BASIC18.19■□□□□ 0.5
COL2A1P02458 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.19■□□□□ 0.5
COL2A1P02458 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
COL2A1P02458 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL2A1P02458 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 AC026471.1-201ENST00000564629 3026 ntBASIC18.18■□□□□ 0.5
COL2A1P02458 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.18■□□□□ 0.5
COL2A1P02458 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.18■□□□□ 0.5
COL2A1P02458 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC18.18■□□□□ 0.5
COL2A1P02458 AC007969.1-201ENST00000433675 447 ntBASIC18.18■□□□□ 0.5
COL2A1P02458 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.18■□□□□ 0.5
COL2A1P02458 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.18■□□□□ 0.5
COL2A1P02458 ENPP7P14-201ENST00000621765 1040 ntBASIC18.18■□□□□ 0.5
COL2A1P02458 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.18■□□□□ 0.5
COL2A1P02458 ABBA01031663.1-201ENST00000635630 790 ntBASIC18.18■□□□□ 0.5
COL2A1P02458 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
COL2A1P02458 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL2A1P02458 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
COL2A1P02458 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
COL2A1P02458 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.17■□□□□ 0.5
COL2A1P02458 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
COL2A1P02458 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.17■□□□□ 0.5
COL2A1P02458 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC18.17■□□□□ 0.5
COL2A1P02458 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
COL2A1P02458 GPAA1P2-201ENST00000417923 928 ntBASIC18.17■□□□□ 0.5
COL2A1P02458 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC18.17■□□□□ 0.5
COL2A1P02458 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL2A1P02458 AL591846.1-201ENST00000451736 433 ntBASIC18.17■□□□□ 0.5
COL2A1P02458 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC18.17■□□□□ 0.5
COL2A1P02458 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.17■□□□□ 0.5
COL2A1P02458 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
COL2A1P02458 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC18.17■□□□□ 0.5
COL2A1P02458 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC18.17■□□□□ 0.5
COL2A1P02458 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.17■□□□□ 0.5
COL2A1P02458 GPR182-203ENST00000622922 591 ntBASIC18.17■□□□□ 0.5
COL2A1P02458 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.17■□□□□ 0.5
COL2A1P02458 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms