Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.12■□□□□ 0.33
KRT39Q6A163 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
KRT39Q6A163 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.12■□□□□ 0.33
KRT39Q6A163 TREML5P-201ENST00000421694 576 ntBASIC17.12■□□□□ 0.33
KRT39Q6A163 AL645939.2-201ENST00000427340 991 ntBASIC17.12■□□□□ 0.33
KRT39Q6A163 AC092183.1-201ENST00000469884 875 ntBASIC17.12■□□□□ 0.33
KRT39Q6A163 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.12■□□□□ 0.33
KRT39Q6A163 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
KRT39Q6A163 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.12■□□□□ 0.33
KRT39Q6A163 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.12■□□□□ 0.33
KRT39Q6A163 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT39Q6A163 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
KRT39Q6A163 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT39Q6A163 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.12■□□□□ 0.33
KRT39Q6A163 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT39Q6A163 MIR943-201ENST00000401286 94 ntBASIC17.11■□□□□ 0.33
KRT39Q6A163 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.11■□□□□ 0.33
KRT39Q6A163 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
KRT39Q6A163 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.11■□□□□ 0.33
KRT39Q6A163 TARDBPP1-201ENST00000442013 1203 ntBASIC17.11■□□□□ 0.33
KRT39Q6A163 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.11■□□□□ 0.33
KRT39Q6A163 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 AL512361.1-201ENST00000554200 418 ntBASIC17.11■□□□□ 0.33
KRT39Q6A163 DUX4L27-201ENST00000554796 1261 ntBASIC17.11■□□□□ 0.33
KRT39Q6A163 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.11■□□□□ 0.33
KRT39Q6A163 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.11■□□□□ 0.33
KRT39Q6A163 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.11■□□□□ 0.33
KRT39Q6A163 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
KRT39Q6A163 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT39Q6A163 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
KRT39Q6A163 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT39Q6A163 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
KRT39Q6A163 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.11■□□□□ 0.33
KRT39Q6A163 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
KRT39Q6A163 Z97205.2-201ENST00000564697 1639 ntBASIC17.1■□□□□ 0.33
KRT39Q6A163 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC127383.1-201ENST00000444697 1800 ntBASIC17.1■□□□□ 0.33
KRT39Q6A163 AC090616.6-203ENST00000579186 1945 ntBASIC17.1■□□□□ 0.33
KRT39Q6A163 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.1■□□□□ 0.33
KRT39Q6A163 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT39Q6A163 RN7SL618P-201ENST00000477850 296 ntBASIC17.1■□□□□ 0.33
KRT39Q6A163 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.1■□□□□ 0.33
KRT39Q6A163 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT39Q6A163 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms