Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
COL4A4P53420 KRT18P25-201ENST00000508931 1278 ntBASIC16.65■□□□□ 0.26
COL4A4P53420 AC245884.6-201ENST00000515672 1067 ntBASIC16.65■□□□□ 0.26
COL4A4P53420 AC044849.1-201ENST00000519737 1188 ntBASIC16.65■□□□□ 0.26
COL4A4P53420 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A4P53420 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 AC145423.3-201ENST00000615987 467 ntBASIC16.65■□□□□ 0.26
COL4A4P53420 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.65■□□□□ 0.26
COL4A4P53420 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
COL4A4P53420 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL4A4P53420 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.64■□□□□ 0.25
COL4A4P53420 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.64■□□□□ 0.25
COL4A4P53420 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL4A4P53420 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL4A4P53420 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.64■□□□□ 0.25
COL4A4P53420 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.64■□□□□ 0.25
COL4A4P53420 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.64■□□□□ 0.25
COL4A4P53420 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.64■□□□□ 0.25
COL4A4P53420 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.64■□□□□ 0.25
COL4A4P53420 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.64■□□□□ 0.25
COL4A4P53420 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
COL4A4P53420 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.64■□□□□ 0.25
COL4A4P53420 REXO1L1P-202ENST00000608646 1974 ntBASIC16.64■□□□□ 0.25
COL4A4P53420 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.64■□□□□ 0.25
COL4A4P53420 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
COL4A4P53420 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL4A4P53420 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
COL4A4P53420 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL4A4P53420 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
COL4A4P53420 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.63■□□□□ 0.25
COL4A4P53420 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
COL4A4P53420 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 AC079178.1-201ENST00000420915 656 ntBASIC16.63■□□□□ 0.25
COL4A4P53420 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.63■□□□□ 0.25
COL4A4P53420 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.63■□□□□ 0.25
COL4A4P53420 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.63■□□□□ 0.25
COL4A4P53420 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC16.63■□□□□ 0.25
COL4A4P53420 AC005730.2-201ENST00000564549 1184 ntBASIC16.63■□□□□ 0.25
COL4A4P53420 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.63■□□□□ 0.25
COL4A4P53420 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.63■□□□□ 0.25
COL4A4P53420 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
COL4A4P53420 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.63■□□□□ 0.25
COL4A4P53420 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.63■□□□□ 0.25
COL4A4P53420 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.63■□□□□ 0.25
COL4A4P53420 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.63■□□□□ 0.25
COL4A4P53420 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
COL4A4P53420 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.63■□□□□ 0.25
COL4A4P53420 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
COL4A4P53420 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
COL4A4P53420 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
COL4A4P53420 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.63■□□□□ 0.25
COL4A4P53420 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL4A4P53420 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
COL4A4P53420 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL4A4P53420 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.62■□□□□ 0.25
COL4A4P53420 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A4P53420 FNTAP2-201ENST00000430308 634 ntBASIC16.62■□□□□ 0.25
COL4A4P53420 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 MBP-227ENST00000526111 581 ntTSL 4 BASIC16.62■□□□□ 0.25
COL4A4P53420 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A4P53420 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.62■□□□□ 0.25
COL4A4P53420 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A4P53420 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A4P53420 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms