Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 AC134312.5-201ENST00000568031 1313 ntBASIC16.31■□□□□ 0.2
HMGA1P17096 AC093525.8-201ENST00000624099 1342 ntBASIC16.31■□□□□ 0.2
HMGA1P17096 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 ACKR1-201ENST00000368121 1240 ntBASIC16.31■□□□□ 0.2
HMGA1P17096 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
HMGA1P17096 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
HMGA1P17096 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.31■□□□□ 0.2
HMGA1P17096 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGA1P17096 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 PCDHB19P-201ENST00000570871 2371 ntBASIC16.31■□□□□ 0.2
HMGA1P17096 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGA1P17096 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGA1P17096 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HMGA1P17096 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HMGA1P17096 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGA1P17096 AC010491.1-201ENST00000563101 2797 ntBASIC16.3■□□□□ 0.2
HMGA1P17096 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 HLA-V-201ENST00000429037 534 ntBASIC16.3■□□□□ 0.2
HMGA1P17096 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 CTBP2P5-201ENST00000454986 1264 ntBASIC16.3■□□□□ 0.2
HMGA1P17096 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
HMGA1P17096 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGA1P17096 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
HMGA1P17096 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGA1P17096 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGA1P17096 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGA1P17096 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGA1P17096 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HMGA1P17096 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HMGA1P17096 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HMGA1P17096 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGA1P17096 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGA1P17096 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HMGA1P17096 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGA1P17096 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGA1P17096 AC022137.2-201ENST00000503482 481 ntBASIC16.29■□□□□ 0.2
HMGA1P17096 AC106760.1-201ENST00000508690 800 ntBASIC16.29■□□□□ 0.2
HMGA1P17096 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGA1P17096 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGA1P17096 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HMGA1P17096 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms