Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
YBX1P67809 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
YBX1P67809 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
YBX1P67809 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.51■□□□□ 0.07
YBX1P67809 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.51■□□□□ 0.07
YBX1P67809 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.5■□□□□ 0.07
YBX1P67809 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
YBX1P67809 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
YBX1P67809 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 MIR943-201ENST00000401286 94 ntBASIC15.5■□□□□ 0.07
YBX1P67809 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.5■□□□□ 0.07
YBX1P67809 RPL37AP1-201ENST00000412502 279 ntBASIC15.5■□□□□ 0.07
YBX1P67809 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 AC107890.1-201ENST00000422478 521 ntBASIC15.5■□□□□ 0.07
YBX1P67809 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.5■□□□□ 0.07
YBX1P67809 CYMP-203ENST00000474680 1263 ntBASIC15.5■□□□□ 0.07
YBX1P67809 AC097493.3-201ENST00000509725 367 ntBASIC15.5■□□□□ 0.07
YBX1P67809 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.5■□□□□ 0.07
YBX1P67809 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.5■□□□□ 0.07
YBX1P67809 AL138828.2-201ENST00000615812 383 ntBASIC15.5■□□□□ 0.07
YBX1P67809 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
YBX1P67809 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 AC020658.6-201ENST00000623564 1870 ntBASIC15.5■□□□□ 0.07
YBX1P67809 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.5■□□□□ 0.07
YBX1P67809 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
YBX1P67809 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.49■□□□□ 0.07
YBX1P67809 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
YBX1P67809 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
YBX1P67809 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
YBX1P67809 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
YBX1P67809 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.49■□□□□ 0.07
YBX1P67809 AC245100.5-201ENST00000452108 331 ntBASIC15.49■□□□□ 0.07
YBX1P67809 AL139010.1-201ENST00000454878 894 ntBASIC15.49■□□□□ 0.07
YBX1P67809 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.49■□□□□ 0.07
YBX1P67809 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 AC140878.1-201ENST00000565277 250 ntBASIC15.49■□□□□ 0.07
YBX1P67809 AC005498.2-205ENST00000593218 784 ntBASIC15.49■□□□□ 0.07
YBX1P67809 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.49■□□□□ 0.07
YBX1P67809 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
YBX1P67809 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
YBX1P67809 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
YBX1P67809 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms