Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC20.79■□□□□ 0.92
HOXC9P31274 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXC9P31274 AC138951.2-201ENST00000623455 1161 ntBASIC20.79■□□□□ 0.92
HOXC9P31274 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXC9P31274 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HOXC9P31274 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
HOXC9P31274 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
HOXC9P31274 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HOXC9P31274 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
HOXC9P31274 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HOXC9P31274 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HOXC9P31274 MIR1247-201ENST00000408206 136 ntBASIC20.78■□□□□ 0.92
HOXC9P31274 GOLGA2P4-201ENST00000441462 777 ntBASIC20.78■□□□□ 0.92
HOXC9P31274 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXC9P31274 AL590640.2-201ENST00000457038 527 ntBASIC20.78■□□□□ 0.92
HOXC9P31274 PFN2-215ENST00000497148 743 ntTSL 4 BASIC20.78■□□□□ 0.92
HOXC9P31274 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXC9P31274 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 GPR39-203ENST00000622084 900 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXC9P31274 BX539320.1-201ENST00000623759 877 ntBASIC20.78■□□□□ 0.92
HOXC9P31274 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC9P31274 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
HOXC9P31274 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC9P31274 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC9P31274 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC9P31274 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC9P31274 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC9P31274 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 MIR326-201ENST00000362220 95 ntBASIC20.77■□□□□ 0.92
HOXC9P31274 RNU1-114P-201ENST00000365297 166 ntBASIC20.77■□□□□ 0.92
HOXC9P31274 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC9P31274 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC20.77■□□□□ 0.92
HOXC9P31274 AC023310.1-201ENST00000554836 735 ntBASIC20.77■□□□□ 0.92
HOXC9P31274 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC9P31274 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.77■□□□□ 0.92
HOXC9P31274 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC9P31274 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC20.77■□□□□ 0.91
HOXC9P31274 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.77■□□□□ 0.91
HOXC9P31274 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
HOXC9P31274 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HOXC9P31274 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXC9P31274 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 GPAA1P2-201ENST00000417923 928 ntBASIC20.76■□□□□ 0.91
HOXC9P31274 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXC9P31274 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXC9P31274 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXC9P31274 HNRNPA1P48-202ENST00000565308 961 ntBASIC20.76■□□□□ 0.91
HOXC9P31274 MIR3615-201ENST00000581999 87 ntBASIC20.76■□□□□ 0.91
HOXC9P31274 AC243960.2-201ENST00000600996 747 ntBASIC20.76■□□□□ 0.91
HOXC9P31274 AC025181.2-201ENST00000606994 802 ntBASIC20.76■□□□□ 0.91
HOXC9P31274 AC132938.4-201ENST00000623835 848 ntBASIC20.76■□□□□ 0.91
HOXC9P31274 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXC9P31274 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC9P31274 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HOXC9P31274 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXC9P31274 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXC9P31274 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HOXC9P31274 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms