Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.12■□□□□ 0.49
SMARCA1P28370 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.11■□□□□ 0.49
SMARCA1P28370 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 COX20P2-201ENST00000452636 358 ntBASIC18.11■□□□□ 0.49
SMARCA1P28370 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.11■□□□□ 0.49
SMARCA1P28370 FAM86LP-201ENST00000478302 853 ntBASIC18.11■□□□□ 0.49
SMARCA1P28370 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.11■□□□□ 0.49
SMARCA1P28370 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.11■□□□□ 0.49
SMARCA1P28370 AC123567.1-201ENST00000548294 1261 ntBASIC18.11■□□□□ 0.49
SMARCA1P28370 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.11■□□□□ 0.49
SMARCA1P28370 BRI3BPP1-201ENST00000594224 787 ntBASIC18.11■□□□□ 0.49
SMARCA1P28370 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.11■□□□□ 0.49
SMARCA1P28370 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
SMARCA1P28370 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.11■□□□□ 0.49
SMARCA1P28370 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMARCA1P28370 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
SMARCA1P28370 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
SMARCA1P28370 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SMARCA1P28370 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.1■□□□□ 0.49
SMARCA1P28370 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.1■□□□□ 0.49
SMARCA1P28370 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.1■□□□□ 0.49
SMARCA1P28370 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SMARCA1P28370 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.1■□□□□ 0.49
SMARCA1P28370 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.1■□□□□ 0.49
SMARCA1P28370 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.1■□□□□ 0.49
SMARCA1P28370 AC104596.2-201ENST00000512793 793 ntBASIC18.1■□□□□ 0.49
SMARCA1P28370 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.1■□□□□ 0.49
SMARCA1P28370 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.1■□□□□ 0.49
SMARCA1P28370 MIR8072-201ENST00000614241 80 ntBASIC18.1■□□□□ 0.49
SMARCA1P28370 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.1■□□□□ 0.49
SMARCA1P28370 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SMARCA1P28370 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SMARCA1P28370 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMARCA1P28370 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
SMARCA1P28370 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.09■□□□□ 0.49
SMARCA1P28370 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SMARCA1P28370 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.09■□□□□ 0.49
SMARCA1P28370 RPL5P21-201ENST00000404620 815 ntBASIC18.09■□□□□ 0.49
SMARCA1P28370 AL035633.1-201ENST00000406139 838 ntBASIC18.09■□□□□ 0.49
SMARCA1P28370 AL442647.2-201ENST00000429864 857 ntBASIC18.09■□□□□ 0.49
SMARCA1P28370 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.09■□□□□ 0.49
SMARCA1P28370 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.09■□□□□ 0.49
SMARCA1P28370 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.09■□□□□ 0.49
SMARCA1P28370 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.09■□□□□ 0.49
SMARCA1P28370 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.09■□□□□ 0.49
SMARCA1P28370 AC092552.1-201ENST00000547243 906 ntBASIC18.09■□□□□ 0.49
SMARCA1P28370 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.09■□□□□ 0.49
SMARCA1P28370 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
SMARCA1P28370 AC025048.6-201ENST00000634326 1161 ntBASIC18.09■□□□□ 0.49
SMARCA1P28370 AL645728.2-202ENST00000641679 227 ntBASIC18.09■□□□□ 0.49
SMARCA1P28370 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms