Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 AC112504.1-201ENST00000623415 1841 ntBASIC16.73■□□□□ 0.27
BDNFP23560 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.72■□□□□ 0.27
BDNFP23560 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
BDNFP23560 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
BDNFP23560 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.72■□□□□ 0.27
BDNFP23560 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.72■□□□□ 0.27
BDNFP23560 WASH4P-201ENST00000564273 1246 ntBASIC16.72■□□□□ 0.27
BDNFP23560 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.72■□□□□ 0.27
BDNFP23560 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.72■□□□□ 0.27
BDNFP23560 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
BDNFP23560 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.72■□□□□ 0.27
BDNFP23560 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.72■□□□□ 0.27
BDNFP23560 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BDNFP23560 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
BDNFP23560 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.71■□□□□ 0.27
BDNFP23560 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.71■□□□□ 0.27
BDNFP23560 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
BDNFP23560 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.71■□□□□ 0.27
BDNFP23560 MST1L-201ENST00000442552 2185 ntBASIC16.71■□□□□ 0.27
BDNFP23560 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 AC005034.1-201ENST00000426657 489 ntBASIC16.71■□□□□ 0.27
BDNFP23560 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.71■□□□□ 0.27
BDNFP23560 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.71■□□□□ 0.27
BDNFP23560 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.71■□□□□ 0.27
BDNFP23560 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.71■□□□□ 0.27
BDNFP23560 AC123567.1-201ENST00000548294 1261 ntBASIC16.71■□□□□ 0.27
BDNFP23560 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 RARRES2P5-201ENST00000564013 466 ntBASIC16.71■□□□□ 0.27
BDNFP23560 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 AL358472.5-202ENST00000641448 1267 ntBASIC16.71■□□□□ 0.27
BDNFP23560 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
BDNFP23560 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.71■□□□□ 0.27
BDNFP23560 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BDNFP23560 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.71■□□□□ 0.27
BDNFP23560 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
BDNFP23560 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
BDNFP23560 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.7■□□□□ 0.26
BDNFP23560 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
BDNFP23560 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.7■□□□□ 0.26
BDNFP23560 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
BDNFP23560 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms