Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 AC020658.6-201ENST00000623564 1870 ntBASIC14.04□□□□□ -0.16
LMX1BO60663 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.03□□□□□ -0.16
LMX1BO60663 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 AC134407.2-201ENST00000625089 1978 ntBASIC14.03□□□□□ -0.16
LMX1BO60663 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.03□□□□□ -0.16
LMX1BO60663 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 KRT18P32-201ENST00000424695 1287 ntBASIC14.03□□□□□ -0.16
LMX1BO60663 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.03□□□□□ -0.16
LMX1BO60663 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 AC140658.5-201ENST00000438532 169 ntBASIC14.03□□□□□ -0.16
LMX1BO60663 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 KRT8P48-201ENST00000515599 1220 ntBASIC14.03□□□□□ -0.16
LMX1BO60663 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 AL390955.2-201ENST00000603032 514 ntBASIC14.03□□□□□ -0.16
LMX1BO60663 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 AL589702.1-201ENST00000641229 1509 ntBASIC14.03□□□□□ -0.16
LMX1BO60663 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.03□□□□□ -0.16
LMX1BO60663 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.03□□□□□ -0.16
LMX1BO60663 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.03□□□□□ -0.16
LMX1BO60663 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.03□□□□□ -0.16
LMX1BO60663 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.03□□□□□ -0.16
LMX1BO60663 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LMX1BO60663 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.02□□□□□ -0.16
LMX1BO60663 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
LMX1BO60663 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
LMX1BO60663 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.02□□□□□ -0.17
LMX1BO60663 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.02□□□□□ -0.17
LMX1BO60663 TFAMP1-201ENST00000412727 736 ntBASIC14.02□□□□□ -0.17
LMX1BO60663 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.02□□□□□ -0.17
LMX1BO60663 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 AC092127.1-201ENST00000567093 3455 ntBASIC14.02□□□□□ -0.17
LMX1BO60663 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
LMX1BO60663 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
LMX1BO60663 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.02□□□□□ -0.17
LMX1BO60663 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LMX1BO60663 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.02□□□□□ -0.17
LMX1BO60663 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
LMX1BO60663 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.02□□□□□ -0.17
LMX1BO60663 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
LMX1BO60663 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.02□□□□□ -0.17
LMX1BO60663 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.01□□□□□ -0.17
LMX1BO60663 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.01□□□□□ -0.17
LMX1BO60663 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.01□□□□□ -0.17
LMX1BO60663 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LMX1BO60663 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms