Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 AC023274.1-201ENST00000418278 595 ntBASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 GPX1P2-201ENST00000429271 606 ntBASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM56Q9BRZ2 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 PMS2P7-201ENST00000506558 1336 ntBASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 MED15P5-201ENST00000423150 992 ntBASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 KRT18P3-201ENST00000451602 1288 ntBASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM56Q9BRZ2 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM56Q9BRZ2 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms