Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 MRPL37P1-201ENST00000592451 1337 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
HSPG2P98160 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC9.58□□□□□ -0.88
HSPG2P98160 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 AC005041.3-201ENST00000606287 649 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 AC090164.2-201ENST00000611487 516 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 E2F3P2-201ENST00000447755 1422 ntBASIC9.57□□□□□ -0.88
HSPG2P98160 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC9.57□□□□□ -0.88
HSPG2P98160 CLUHP2-201ENST00000426660 1303 ntBASIC9.57□□□□□ -0.88
HSPG2P98160 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC9.57□□□□□ -0.88
HSPG2P98160 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC9.57□□□□□ -0.88
HSPG2P98160 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC9.57□□□□□ -0.88
HSPG2P98160 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 ALG1L6P-201ENST00000515248 758 ntBASIC9.57□□□□□ -0.88
HSPG2P98160 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC9.57□□□□□ -0.88
HSPG2P98160 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC9.57□□□□□ -0.88
HSPG2P98160 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC9.57□□□□□ -0.88
HSPG2P98160 UBALD1-205ENST00000590891 2641 ntBASIC9.57□□□□□ -0.88
HSPG2P98160 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC9.57□□□□□ -0.88
HSPG2P98160 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC9.57□□□□□ -0.88
HSPG2P98160 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 MIR557-201ENST00000385239 98 ntBASIC9.57□□□□□ -0.88
HSPG2P98160 POM121L8P-201ENST00000417732 1281 ntBASIC9.57□□□□□ -0.88
HSPG2P98160 POM121L9P-203ENST00000441984 1285 ntBASIC9.57□□□□□ -0.88
HSPG2P98160 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC9.57□□□□□ -0.88
HSPG2P98160 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC9.57□□□□□ -0.88
HSPG2P98160 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC9.57□□□□□ -0.88
HSPG2P98160 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC9.57□□□□□ -0.88
HSPG2P98160 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 CMC2-214ENST00000565925 640 ntTSL 5 BASIC9.57□□□□□ -0.88
HSPG2P98160 MIR4522-201ENST00000584932 87 ntBASIC9.57□□□□□ -0.88
HSPG2P98160 DDX5-235ENST00000630471 473 ntTSL 4 BASIC9.57□□□□□ -0.88
HSPG2P98160 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC9.57□□□□□ -0.88
HSPG2P98160 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC9.57□□□□□ -0.88
HSPG2P98160 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
HSPG2P98160 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 LYPLA2P1-203ENST00000447689 696 ntBASIC9.56□□□□□ -0.88
HSPG2P98160 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC9.56□□□□□ -0.88
HSPG2P98160 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
HSPG2P98160 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC9.56□□□□□ -0.88
HSPG2P98160 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC9.56□□□□□ -0.88
HSPG2P98160 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 PFN2-206ENST00000461930 606 ntTSL 4 BASIC9.56□□□□□ -0.88
HSPG2P98160 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC9.56□□□□□ -0.88
HSPG2P98160 AL132780.4-201ENST00000624870 1135 ntBASIC9.56□□□□□ -0.88
HSPG2P98160 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC9.56□□□□□ -0.88
HSPG2P98160 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC9.56□□□□□ -0.88
HSPG2P98160 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC9.56□□□□□ -0.88
HSPG2P98160 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC9.56□□□□□ -0.88
HSPG2P98160 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
HSPG2P98160 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
HSPG2P98160 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 AQP7P5-201ENST00000428759 1049 ntBASIC9.56□□□□□ -0.88
HSPG2P98160 AQP7P4-201ENST00000447083 1042 ntBASIC9.56□□□□□ -0.88
HSPG2P98160 AQP7P2-201ENST00000453967 1041 ntBASIC9.56□□□□□ -0.88
HSPG2P98160 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
HSPG2P98160 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC9.56□□□□□ -0.88
HSPG2P98160 AQP7P3-201ENST00000624547 1041 ntBASIC9.56□□□□□ -0.88
HSPG2P98160 NAP1L6-202ENST00000641404 1222 ntBASIC9.56□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms