Protein–RNA interactions for Protein: P54764

EPHA4, Ephrin type-A receptor 4, humanhuman

Predictions only

Length 986 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4P54764 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.31■□□□□ 0.04
EPHA4P54764 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.31■□□□□ 0.04
EPHA4P54764 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.31■□□□□ 0.04
EPHA4P54764 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.31■□□□□ 0.04
EPHA4P54764 RN7SL399P-201ENST00000471648 279 ntBASIC15.31■□□□□ 0.04
EPHA4P54764 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.31■□□□□ 0.04
EPHA4P54764 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.31■□□□□ 0.04
EPHA4P54764 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.31■□□□□ 0.04
EPHA4P54764 HNRNPUP1-201ENST00000554987 333 ntBASIC15.31■□□□□ 0.04
EPHA4P54764 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.31■□□□□ 0.04
EPHA4P54764 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.31■□□□□ 0.04
EPHA4P54764 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
EPHA4P54764 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
EPHA4P54764 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.31■□□□□ 0.04
EPHA4P54764 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
EPHA4P54764 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
EPHA4P54764 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
EPHA4P54764 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 OR8S1-201ENST00000310194 1080 ntBASIC15.3■□□□□ 0.04
EPHA4P54764 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.3■□□□□ 0.04
EPHA4P54764 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 CLK3P2-201ENST00000427566 1453 ntBASIC15.3■□□□□ 0.04
EPHA4P54764 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.3■□□□□ 0.04
EPHA4P54764 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.3■□□□□ 0.04
EPHA4P54764 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.3■□□□□ 0.04
EPHA4P54764 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.3■□□□□ 0.04
EPHA4P54764 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
EPHA4P54764 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.3■□□□□ 0.04
EPHA4P54764 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
EPHA4P54764 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
EPHA4P54764 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.3■□□□□ 0.04
EPHA4P54764 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 CTBP2P3-201ENST00000585629 1255 ntBASIC15.3■□□□□ 0.04
EPHA4P54764 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
EPHA4P54764 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
EPHA4P54764 IGHV3-72-202ENST00000621503 303 ntBASIC15.3■□□□□ 0.04
EPHA4P54764 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
EPHA4P54764 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
EPHA4P54764 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
EPHA4P54764 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
EPHA4P54764 AC011477.6-201ENST00000604980 1927 ntBASIC15.29■□□□□ 0.04
EPHA4P54764 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 MTHFR-217ENST00000641820 1569 ntBASIC15.29■□□□□ 0.04
EPHA4P54764 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.29■□□□□ 0.04
EPHA4P54764 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
EPHA4P54764 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.29■□□□□ 0.04
EPHA4P54764 AC098850.1-201ENST00000419919 790 ntBASIC15.29■□□□□ 0.04
EPHA4P54764 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 AL442647.2-201ENST00000429864 857 ntBASIC15.29■□□□□ 0.04
EPHA4P54764 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.29■□□□□ 0.04
EPHA4P54764 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.29■□□□□ 0.04
EPHA4P54764 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.29■□□□□ 0.04
EPHA4P54764 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.29■□□□□ 0.04
EPHA4P54764 AC092552.1-201ENST00000547243 906 ntBASIC15.29■□□□□ 0.04
EPHA4P54764 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.29■□□□□ 0.04
EPHA4P54764 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.29■□□□□ 0.04
EPHA4P54764 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.29■□□□□ 0.04
EPHA4P54764 MIR8072-201ENST00000614241 80 ntBASIC15.29■□□□□ 0.04
EPHA4P54764 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 PCDHA14-201ENST00000506751 2298 ntBASIC15.29■□□□□ 0.04
EPHA4P54764 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
EPHA4P54764 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
EPHA4P54764 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms